SRR2935089.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935089.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3225275
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	7532	0.2335304741456155	No Hit
GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	6607	0.20485074916092427	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGC	5116	0.15862213299641117	No Hit
CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT	5056	0.1567618265109177	TruSeq Adapter, Index 19 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	4781	0.1482354217857392	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCG	4015	0.12448550898760571	No Hit
CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	3729	0.11561804807342009	TruSeq Adapter, Index 13 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC	3445	0.10681259737541761	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	40	3.4608092E-7	39.375004	1
ACAACGA	595	0.0	39.327732	13
TACGGGA	770	0.0	38.57143	4
ATTACGC	30	1.14037895E-4	37.500004	28
CGATCAT	30	1.14037895E-4	37.500004	10
CACAACG	640	0.0	37.26563	12
ACGCATA	270	0.0	36.666668	25
TTACGGG	865	0.0	36.156067	3
TACGGGT	355	0.0	36.126762	4
CGAAACG	25	0.0021076715	36.000004	2
CCGTAAC	25	0.0021076715	36.000004	6
ACGTCGT	25	0.0021076715	36.000004	45
AATCGTC	25	0.0021076715	36.000004	10
AACGAGC	815	0.0	35.889572	15
TTGTACG	145	0.0	35.68966	1
TATAGCG	230	0.0	35.217392	1
AGCGACT	820	0.0	34.84756	19
ATGGGCG	1170	0.0	34.230766	5
TGGGCGA	1950	0.0	33.80769	6
CGTAATC	40	1.5614378E-5	33.750004	23