##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935089.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3225275 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.105947864910746 33.0 31.0 34.0 30.0 34.0 2 32.420539023804174 34.0 31.0 34.0 30.0 34.0 3 32.47526520994334 34.0 31.0 34.0 30.0 34.0 4 35.97551247568037 37.0 35.0 37.0 35.0 37.0 5 30.43678911100604 37.0 35.0 37.0 0.0 37.0 6 32.91202920681182 37.0 35.0 37.0 17.0 37.0 7 35.11416855927014 37.0 35.0 37.0 32.0 37.0 8 35.67288339753974 37.0 35.0 37.0 35.0 37.0 9 37.593416375347836 39.0 37.0 39.0 35.0 39.0 10 37.46146204587206 39.0 37.0 39.0 35.0 39.0 11 37.31256838564153 39.0 37.0 39.0 34.0 39.0 12 37.057083814558446 39.0 37.0 39.0 34.0 39.0 13 36.92683507607878 39.0 37.0 39.0 33.0 39.0 14 37.81471068358512 40.0 37.0 41.0 33.0 41.0 15 38.002855260404154 40.0 37.0 41.0 33.0 41.0 16 38.20763965863376 40.0 37.0 41.0 33.0 41.0 17 38.25613660850625 40.0 37.0 41.0 34.0 41.0 18 38.23106184743936 40.0 37.0 41.0 34.0 41.0 19 38.20802443202518 40.0 37.0 41.0 34.0 41.0 20 38.07496415034377 40.0 36.0 41.0 33.0 41.0 21 38.0656756400617 40.0 36.0 41.0 33.0 41.0 22 38.11622450798769 40.0 36.0 41.0 34.0 41.0 23 38.06777561603274 40.0 36.0 41.0 34.0 41.0 24 38.04253962840378 40.0 36.0 41.0 34.0 41.0 25 37.97939586546884 40.0 36.0 41.0 34.0 41.0 26 37.91671903946175 40.0 36.0 41.0 34.0 41.0 27 37.86133430482672 40.0 36.0 41.0 34.0 41.0 28 37.81133329716071 40.0 36.0 41.0 34.0 41.0 29 37.77385711295936 40.0 36.0 41.0 33.0 41.0 30 37.66029036283728 40.0 35.0 41.0 33.0 41.0 31 33.09582593732318 38.0 33.0 41.0 9.0 41.0 32 33.9917176054755 38.0 33.0 41.0 16.0 41.0 33 35.91588097139004 38.0 34.0 41.0 29.0 41.0 34 36.7280110998287 38.0 35.0 41.0 31.0 41.0 35 36.906835231104324 39.0 35.0 41.0 31.0 41.0 36 37.07738688949004 39.0 35.0 41.0 32.0 41.0 37 37.19331932935951 39.0 35.0 41.0 32.0 41.0 38 37.17580423374751 39.0 35.0 41.0 32.0 41.0 39 37.15623070900931 39.0 35.0 41.0 32.0 41.0 40 37.102556216136605 39.0 35.0 41.0 32.0 41.0 41 37.034592399097754 39.0 35.0 41.0 32.0 41.0 42 36.98849493454046 39.0 35.0 41.0 32.0 41.0 43 36.999625148243176 39.0 35.0 41.0 32.0 41.0 44 36.951885653161355 39.0 35.0 41.0 32.0 41.0 45 36.92577160087124 39.0 35.0 41.0 32.0 41.0 46 36.91012797358365 39.0 35.0 41.0 32.0 41.0 47 36.81372224073916 39.0 35.0 41.0 32.0 41.0 48 36.78785312880297 39.0 35.0 41.0 32.0 41.0 49 36.77309531745355 39.0 35.0 41.0 32.0 41.0 50 36.57046081341901 39.0 35.0 41.0 32.0 41.0 51 35.930388571517156 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 27.0 10 51.0 11 48.0 12 39.0 13 58.0 14 68.0 15 111.0 16 190.0 17 347.0 18 709.0 19 1234.0 20 2004.0 21 3413.0 22 5299.0 23 8120.0 24 11654.0 25 15120.0 26 18858.0 27 23388.0 28 28800.0 29 37227.0 30 51051.0 31 75367.0 32 108544.0 33 132838.0 34 251955.0 35 289366.0 36 356476.0 37 367293.0 38 534522.0 39 900155.0 40 934.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.82361969134415 20.85276449295021 24.324902527691435 9.998713288014201 2 33.1965801365775 24.077760811093626 24.87282479788545 17.85283425444342 3 32.605994837649504 24.544325677655394 25.237072807745076 17.612606676950026 4 29.493516056770353 25.231398872964323 25.79575385044686 19.479331219818466 5 23.381944175302884 38.93202905178628 21.00685988016526 16.67916689274558 6 27.80779933494043 34.01905263892226 23.694444659757696 14.47870336637961 7 80.71978358434552 6.17879095580997 8.288998612521413 4.8124268473230964 8 82.14580152080056 5.345931742254536 7.4880126500841016 5.0202540868608105 9 76.48284254830983 6.512746975064141 9.647177372472115 7.357233104153909 10 44.48240847679655 22.740882560401825 17.295920502902852 15.480788459898767 11 33.90222539163327 24.57005991737139 23.148475711373447 18.379238979621892 12 30.3652556758726 22.484253280728 27.53681469022021 19.613676353179184 13 28.46123198797002 21.922006650595684 30.85178783204533 18.764973529388968 14 23.08835680678392 24.485788033578533 32.26205517358985 20.1637999860477 15 22.574881211679624 24.785235367526802 33.65033989349745 18.98954352729612 16 27.957895063211662 24.41661563742627 27.672120981931776 19.953368317430296 17 28.227143421878754 23.98725690057437 26.3079582361194 21.477641441427476 18 28.483617676012123 23.36678267744611 28.448426878328203 19.701172768213564 19 26.484346296052273 25.770577702676515 26.336172884482718 21.40890311678849 20 24.403841532892546 29.427630202075793 27.092666516808645 19.07586174822302 21 24.775530768694143 26.297106448287355 30.31710474300641 18.61025804001209 22 22.91528629341684 23.55848726077621 31.476013673252666 22.05021277255428 23 22.3487299532598 25.38871879142089 30.717225662927966 21.545325592391347 24 23.273767353171433 26.38382773561944 28.04892606056848 22.293478850640643 25 23.679531202765656 26.530729937757247 26.73954934075389 23.05018951872321 26 21.62122609699948 26.31874801373526 27.20775747804451 24.85226841122075 27 22.10121617536489 25.760780088519585 29.594902760229747 22.54310097588578 28 20.469479346722373 26.56151801009216 27.94003612095093 25.028966522234537 29 23.224159180224945 27.520040926742677 26.884436210865744 22.37136368216664 30 25.129175031586453 25.530350125183126 28.00973560394075 21.330739239289674 31 26.611095177930565 26.189983799831023 26.28510747145592 20.913813550782493 32 27.33949818232554 26.155599134957484 25.45913139189682 21.045771290820163 33 25.85782607684616 25.83190580648162 26.35511700552666 21.95515111114556 34 22.777127531760858 25.835099332615048 28.931982544124146 22.455790591499948 35 22.586477122105865 28.353148181162847 27.46094519072017 21.599429506011113 36 25.57800497631985 27.737665780437325 26.0442597918007 20.640069451442127 37 23.839703591166643 27.19321608234957 26.90297726550449 22.064103060979296 38 25.234065312260196 26.119385168706543 26.610103014471637 22.036446504561628 39 24.2684732309648 25.525544333428936 26.075636961189357 24.13034547441691 40 23.866181953476836 24.346358062490793 28.65622311275783 23.131236871274545 41 21.520273465053368 24.807621055568905 27.775523017417118 25.89658246196061 42 22.72144235762842 24.13853082295308 30.33363046561921 22.80639635379929 43 23.152413360101075 23.953306307214113 29.577663920130842 23.316616412553966 44 23.841129826138857 24.275914456906776 27.740022168652285 24.142933548302086 45 21.8947841656913 23.983970359116665 27.08736464332499 27.03388083186705 46 22.960925812527613 24.664873537915373 28.08476796552232 24.289432684034693 47 20.697118850330593 25.459565463410094 31.15228933966871 22.6910263465906 48 21.28571982234073 26.67403554735643 28.764430939997364 23.275813690305476 49 24.555921588081635 23.62266783452574 29.13925169171621 22.682158885676415 50 21.78279371526459 25.195060886281013 28.16116455185992 24.860980846594476 51 21.30342373906101 24.981776747719188 26.683771151297176 27.031028361922626 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 876.0 1 2048.0 2 3220.0 3 4375.5 4 5531.0 5 4599.5 6 3668.0 7 3545.5 8 3423.0 9 3649.0 10 3875.0 11 4233.5 12 4592.0 13 4955.0 14 5318.0 15 5595.5 16 5873.0 17 6103.5 18 6334.0 19 6704.0 20 7074.0 21 7690.5 22 8307.0 23 9942.0 24 11577.0 25 13157.0 26 18699.5 27 22662.0 28 26691.0 29 30720.0 30 35928.5 31 41137.0 32 48381.5 33 55626.0 34 66330.0 35 77034.0 36 84685.5 37 92337.0 38 102261.5 39 112186.0 40 125192.0 41 138198.0 42 149797.0 43 161396.0 44 182113.0 45 202830.0 46 243150.5 47 283471.0 48 305799.5 49 328128.0 50 326805.0 51 325482.0 52 297946.0 53 270410.0 54 246294.5 55 222179.0 56 206647.0 57 191115.0 58 180912.0 59 170709.0 60 145117.5 61 119526.0 62 105851.0 63 92176.0 64 80255.5 65 68335.0 66 59602.0 67 50869.0 68 42351.5 69 33834.0 70 27555.0 71 21276.0 72 17046.5 73 12817.0 74 10323.0 75 6194.0 76 4559.0 77 3292.0 78 2025.0 79 1493.5 80 962.0 81 748.0 82 534.0 83 424.0 84 314.0 85 204.5 86 95.0 87 75.5 88 56.0 89 46.0 90 36.0 91 18.5 92 1.0 93 1.5 94 2.0 95 2.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3225275.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.220427687859207 #Duplication Level Percentage of deduplicated Percentage of total 1 67.71641765998415 15.046877618945501 2 13.115956899981274 5.828843437062239 3 5.57845707322504 3.7186710601627113 4 2.8502777875332352 2.5333756587277434 5 1.7357018878240236 1.9284019143037214 6 1.0891179273542433 1.4520399688995635 7 0.7606064503981337 1.1830700440993702 8 0.5689785361383143 1.011435713456432 9 0.44353622380736224 0.8870008129251866 >10 3.787632774908277 19.193595766742316 >50 1.8405167385422114 29.97267945683657 >100 0.5036246389558227 14.269696133305985 >500 0.005536880123818196 0.8223448480207136 >1k 0.003005734924358449 1.2973883752564117 >5k 6.327862998649367E-4 0.8545791912555171 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 7532 0.2335304741456155 No Hit GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC 6607 0.20485074916092427 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGC 5116 0.15862213299641117 No Hit CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT 5056 0.1567618265109177 TruSeq Adapter, Index 19 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 4781 0.1482354217857392 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCG 4015 0.12448550898760571 No Hit CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC 3729 0.11561804807342009 TruSeq Adapter, Index 13 (95% over 22bp) GAATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC 3445 0.10681259737541761 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.201021618311617E-5 0.0 0.0 0.1643580779933494 0.0 2 6.201021618311617E-5 0.0 0.0 0.6156994364821604 0.0 3 6.201021618311617E-5 0.0 0.0 0.9071474525428064 0.0 4 9.301532427467425E-5 0.0 0.0 1.3318554231809692 0.0 5 9.301532427467425E-5 0.0 0.0 2.4477912736123275 0.0 6 9.301532427467425E-5 0.0 0.0 3.2067343094774863 0.0 7 9.301532427467425E-5 0.0 0.0 3.893497453705498 0.0 8 9.301532427467425E-5 0.0 0.0 5.076063281425615 0.0 9 9.301532427467425E-5 0.0 0.0 5.478323553805489 0.0 10 9.301532427467425E-5 0.0 0.0 6.463417848090473 0.0 11 9.301532427467425E-5 0.0 0.0 7.852632721240824 0.0 12 9.301532427467425E-5 0.0 0.0 9.086884064149569 0.0 13 9.301532427467425E-5 0.0 0.0 9.527807706319615 0.0 14 9.301532427467425E-5 0.0 0.0 9.736875150180992 0.0 15 9.301532427467425E-5 0.0 0.0 10.106114982443357 0.0 16 1.2402043236623233E-4 0.0 0.0 10.749563990667463 0.0 17 1.2402043236623233E-4 0.0 0.0 11.493128492919208 0.0 18 1.2402043236623233E-4 0.0 0.0 12.298145119408423 0.0 19 1.5502554045779043E-4 0.0 0.0 12.911612188107991 0.0 20 1.5502554045779043E-4 0.0 0.0 13.459100386788723 0.0 21 1.5502554045779043E-4 0.0 0.0 14.09144956631605 0.0 22 1.5502554045779043E-4 0.0 0.0 14.751424297152957 0.0 23 1.5502554045779043E-4 0.0 0.0 15.335436513165543 0.0 24 1.5502554045779043E-4 0.0 0.0 15.83244839587322 0.0 25 1.5502554045779043E-4 0.0 0.0 16.297835068327508 0.0 26 1.5502554045779043E-4 0.0 0.0 16.737580516390075 0.0 27 1.5502554045779043E-4 0.0 0.0 17.236638736231793 0.0 28 1.860306485493485E-4 0.0 0.0 17.690150452287014 0.0 29 1.860306485493485E-4 0.0 0.0 18.227686011270357 0.0 30 1.860306485493485E-4 0.0 0.0 18.881738766461776 0.0 31 1.860306485493485E-4 0.0 0.0 19.382564277464713 0.0 32 1.860306485493485E-4 0.0 0.0 19.912379564533257 0.0 33 1.860306485493485E-4 0.0 0.0 20.481416313337622 0.0 34 1.860306485493485E-4 0.0 0.0 21.08031098123416 0.0 35 2.1703575664090658E-4 0.0 0.0 21.708691506925767 0.0 36 2.4804086473246466E-4 0.0 0.0 22.265946314655338 0.0 37 2.7904597282402274E-4 0.0 0.0 22.862329568796458 0.0 38 3.1005108091558087E-4 0.0 0.0 23.611319964964228 0.0 39 3.1005108091558087E-4 0.0 0.0 24.920882715427368 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGCG 40 3.4608092E-7 39.375004 1 ACAACGA 595 0.0 39.327732 13 TACGGGA 770 0.0 38.57143 4 ATTACGC 30 1.14037895E-4 37.500004 28 CGATCAT 30 1.14037895E-4 37.500004 10 CACAACG 640 0.0 37.26563 12 ACGCATA 270 0.0 36.666668 25 TTACGGG 865 0.0 36.156067 3 TACGGGT 355 0.0 36.126762 4 CGAAACG 25 0.0021076715 36.000004 2 CCGTAAC 25 0.0021076715 36.000004 6 ACGTCGT 25 0.0021076715 36.000004 45 AATCGTC 25 0.0021076715 36.000004 10 AACGAGC 815 0.0 35.889572 15 TTGTACG 145 0.0 35.68966 1 TATAGCG 230 0.0 35.217392 1 AGCGACT 820 0.0 34.84756 19 ATGGGCG 1170 0.0 34.230766 5 TGGGCGA 1950 0.0 33.80769 6 CGTAATC 40 1.5614378E-5 33.750004 23 >>END_MODULE