SRR2935088.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935088.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3629365
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	11827	0.3258696769269555	Illumina PCR Primer Index 5 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	10250	0.28241854980141157	Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	10169	0.28018675443224916	Illumina PCR Primer Index 5 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCC	4714	0.1298849798794004	No Hit
TCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	4312	0.11880866212133527	Illumina PCR Primer Index 5 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATTC	20	7.035301E-4	45.0	27
TAAGCGA	60	3.6379788E-12	41.249996	16
CGTAAGG	670	0.0	40.970146	2
GCGCGTT	485	0.0	40.824738	31
CTCGACG	50	1.0822987E-9	40.5	1
CCCGTTG	40	3.460973E-7	39.375	17
TATAGCG	160	0.0	39.375	1
TTCGCGC	40	3.460973E-7	39.375	1
CGTTTTT	2800	0.0	38.491074	1
CACGCGT	170	0.0	38.382355	31
ACGCGTA	460	0.0	38.152172	25
TACGGGA	2165	0.0	38.140877	4
TACTACG	130	0.0	38.076927	1
TACGGGT	450	0.0	38.0	4
AACGCGT	320	0.0	37.96875	31
CGTACCG	30	1.1404074E-4	37.499996	2
TTTACGG	385	0.0	37.4026	2
TCGCGTT	350	0.0	37.285717	31
GAGTACG	170	0.0	37.058826	1
CGCGTAT	480	0.0	37.031246	26