##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935084.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3133209 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.11529617079486 33.0 31.0 34.0 30.0 34.0 2 32.439216471036566 34.0 31.0 34.0 30.0 34.0 3 32.49886585925165 34.0 31.0 34.0 31.0 34.0 4 35.988717956574234 37.0 35.0 37.0 35.0 37.0 5 30.462547503214754 37.0 35.0 37.0 0.0 37.0 6 32.93270988306238 37.0 35.0 37.0 17.0 37.0 7 35.14882505444099 37.0 35.0 37.0 32.0 37.0 8 35.74478529839535 37.0 35.0 37.0 35.0 37.0 9 37.66999552216274 39.0 38.0 39.0 35.0 39.0 10 37.504055746041836 39.0 37.0 39.0 35.0 39.0 11 37.340977891995074 39.0 37.0 39.0 35.0 39.0 12 37.08893597586372 39.0 37.0 39.0 34.0 39.0 13 36.987054167149395 39.0 37.0 39.0 33.0 39.0 14 37.89757561656436 40.0 37.0 41.0 33.0 41.0 15 38.08139897466144 40.0 37.0 41.0 33.0 41.0 16 38.26606236609176 40.0 37.0 41.0 33.0 41.0 17 38.32278631907415 40.0 37.0 41.0 34.0 41.0 18 38.29882111279522 40.0 37.0 41.0 34.0 41.0 19 38.285132590899615 40.0 37.0 41.0 34.0 41.0 20 38.196913771152836 40.0 37.0 41.0 34.0 41.0 21 38.16918947953999 40.0 37.0 41.0 34.0 41.0 22 38.212107459157686 40.0 36.0 41.0 34.0 41.0 23 38.17205906149255 40.0 36.0 41.0 34.0 41.0 24 38.14286183909213 40.0 36.0 41.0 34.0 41.0 25 38.082261987629934 40.0 36.0 41.0 34.0 41.0 26 38.03625548120154 40.0 36.0 41.0 34.0 41.0 27 38.01180195767343 40.0 36.0 41.0 34.0 41.0 28 37.96809724470982 40.0 36.0 41.0 34.0 41.0 29 37.95827313147639 40.0 36.0 41.0 34.0 41.0 30 37.843586559339 40.0 36.0 41.0 34.0 41.0 31 33.216139108498666 39.0 34.0 41.0 9.0 41.0 32 34.1538563179156 39.0 34.0 41.0 16.0 41.0 33 36.13298602167937 38.0 34.0 41.0 30.0 41.0 34 36.93496475977185 38.0 35.0 41.0 31.0 41.0 35 37.087889444974785 39.0 35.0 41.0 32.0 41.0 36 37.285794212898026 39.0 35.0 41.0 32.0 41.0 37 37.41171240092825 39.0 35.0 41.0 33.0 41.0 38 37.40269608570638 39.0 35.0 41.0 33.0 41.0 39 37.40141784349528 39.0 35.0 41.0 33.0 41.0 40 37.347004939664096 39.0 35.0 41.0 33.0 41.0 41 37.259591045474465 39.0 35.0 41.0 33.0 41.0 42 37.21380507971221 39.0 35.0 41.0 33.0 41.0 43 37.23001721238513 39.0 35.0 41.0 33.0 41.0 44 37.17315665823761 39.0 35.0 41.0 33.0 41.0 45 37.13119552509903 39.0 35.0 41.0 33.0 41.0 46 37.10818876110722 39.0 35.0 41.0 33.0 41.0 47 37.015089641323 39.0 35.0 41.0 33.0 41.0 48 36.99578451357697 39.0 35.0 41.0 33.0 41.0 49 36.966222170305265 39.0 35.0 41.0 33.0 41.0 50 36.77742052955931 39.0 35.0 41.0 32.0 41.0 51 36.13911583938384 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 13.0 10 20.0 11 29.0 12 32.0 13 52.0 14 59.0 15 98.0 16 168.0 17 315.0 18 578.0 19 873.0 20 1501.0 21 2477.0 22 3932.0 23 6111.0 24 8857.0 25 12062.0 26 15799.0 27 20048.0 28 25587.0 29 33637.0 30 46052.0 31 69061.0 32 101209.0 33 123117.0 34 243528.0 35 278069.0 36 349710.0 37 355472.0 38 524152.0 39 909741.0 40 849.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80464820572136 20.75830243051134 26.562575302190183 10.874474061577125 2 31.171715643610113 23.857457322508647 26.758827770506212 18.211999263375027 3 32.29344100569097 23.401279646522145 26.95619730442495 17.349082043361932 4 28.473778799945997 25.876760854446673 26.445060000785137 19.204400344822194 5 22.84220427044605 39.205587625977074 21.228778546212528 16.72342955736435 6 28.115775232357628 32.8738044605387 23.236624176682756 15.77379613042092 7 83.04272073774843 5.3235835847528845 6.991649775038946 4.6420459024597465 8 85.0169905678172 3.7067428313910753 6.5214289886183785 4.7548376121733344 9 78.98068721237556 5.927756495018366 8.95991936701318 6.131636925592899 10 43.71278775210974 25.25580004398047 15.98042135076211 15.050990853147683 11 32.64100798893403 23.71986675641491 24.15794796963752 19.481177285013544 12 29.307269320367713 21.928955265990872 28.786301839424056 19.97747357421736 13 27.327095000684604 21.974659207221734 31.30956153898447 19.388684253109194 14 21.818525352123014 24.302847336388986 32.92601929842535 20.952608013062644 15 20.460173579228197 24.05939086731846 34.91800259733711 20.562432956116236 16 26.68053742983631 24.534494826230873 28.767120227217525 20.01784751671529 17 27.09455385836055 23.759666208031447 26.439953415172752 22.705826518435252 18 27.40321504246924 22.93721867899652 28.778737709485707 20.88082856904854 19 26.407941506615103 25.7751078846001 26.49306190554157 21.323888703243224 20 24.884200192199117 28.44001150258409 26.998518132687604 19.677270172529187 21 24.00095237821671 25.648528393733073 30.48111377185499 19.86940545619523 22 22.795606676733023 22.84485331173248 30.676919413929937 23.682620597604565 23 21.85021809907989 24.76914243512003 30.97862287514175 22.40201659065833 24 23.232060165791683 25.246065615156855 28.932701265699162 22.5891729533523 25 24.390552944281726 25.345931280039093 26.905993184623178 23.357522591056007 26 21.561249185738966 25.35975097735261 27.39932127093979 25.67967856596863 27 22.4339965830559 24.18587460970526 29.884919901608864 23.49520890562998 28 19.990814529129718 25.173839344901666 28.426191805270573 26.409154320698047 29 22.064152120078806 25.6763273691605 28.72652287159905 23.53299763916164 30 26.274595789811663 23.335915350683596 28.381668761962576 22.00782009754217 31 26.36775906107764 24.7297578935845 27.126118940677113 21.776364104660747 32 26.089960803763805 23.964089213327295 27.8651057111096 22.080844271799297 33 26.816213026325407 23.337160080926616 26.811649015434334 23.034977877313644 34 22.239882497465057 23.044488893016712 31.455609887498724 23.260018722019502 35 21.801003380240513 25.55121602165703 30.749145684185127 21.898634913917327 36 24.76927009976034 25.07697379906671 27.76268675342117 22.391069347751777 37 22.49036052175262 26.004840404837342 28.761662563844286 22.74313650956575 38 23.542125660943782 24.625743127892203 28.254738193334695 23.577393017829323 39 23.773262492224426 22.86010923624948 28.03071866575131 25.33590960577478 40 25.20221281121049 21.651284673317356 30.68783474067641 22.458667774795746 41 21.005078180229916 23.324170203775108 29.027715674249627 26.643035941745346 42 21.31456918450062 22.95512364479995 30.604310149753815 25.12599702094562 43 22.127569530152634 22.387526653983183 30.069235726055936 25.415668089808246 44 22.92802682489422 22.56459751009269 28.684872282698027 25.822503382315066 45 22.546086137247787 21.346006602176875 28.423000189262833 27.68490707131251 46 22.980401243581262 22.196316938959388 29.686050308166482 25.137231509292867 47 20.367201804922686 23.367288936039696 32.20480982915599 24.060699429881634 48 20.754408658981895 24.326816372607126 30.13294038157046 24.785834586840522 49 23.461409692107996 21.93367885768233 30.709346232568592 23.89556521764108 50 21.07433624759791 22.868535102509917 29.931677076122277 26.125451573769897 51 20.921745086267784 22.84134253412396 28.33251787544335 27.904394504164898 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1058.0 1 1849.5 2 2641.0 3 4079.5 4 5518.0 5 4236.5 6 2955.0 7 2889.0 8 2823.0 9 3028.5 10 3234.0 11 3588.0 12 3942.0 13 3968.5 14 3995.0 15 4208.0 16 4421.0 17 4256.0 18 4091.0 19 4547.0 20 5003.0 21 6100.0 22 7197.0 23 8494.0 24 9791.0 25 12570.5 26 17551.5 27 19753.0 28 25302.0 29 30851.0 30 35763.5 31 40676.0 32 47580.0 33 54484.0 34 64595.5 35 74707.0 36 81291.0 37 87875.0 38 96008.0 39 104141.0 40 118373.5 41 132606.0 42 145835.0 43 159064.0 44 175524.0 45 191984.0 46 224467.0 47 256950.0 48 288150.5 49 319351.0 50 321238.5 51 323126.0 52 290110.0 53 257094.0 54 234232.0 55 211370.0 56 196428.5 57 181487.0 58 173188.5 59 164890.0 60 147649.5 61 130409.0 62 115429.0 63 100449.0 64 90005.5 65 79562.0 66 65121.0 67 50680.0 68 42317.0 69 33954.0 70 28116.5 71 22279.0 72 18783.5 73 15288.0 74 12112.5 75 7079.0 76 5221.0 77 3585.5 78 1950.0 79 1472.5 80 995.0 81 833.0 82 671.0 83 464.5 84 258.0 85 184.0 86 110.0 87 62.5 88 15.0 89 9.0 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3133209.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.704781471893583 #Duplication Level Percentage of deduplicated Percentage of total 1 66.73733733446807 15.152566601951426 2 13.552960806225784 6.154340268049902 3 5.716231643061531 3.8935737089530575 4 3.0206955005371 2.7433692493130826 5 1.7940932446704996 2.03672475302221 6 1.1484019737110203 1.5644529512999998 7 0.7819432050141967 1.2427694715295592 8 0.6081326556360929 1.1046015241711842 9 0.4398127419638347 0.8987266975358867 >10 3.9202628227638416 20.454721414847004 >50 1.889691917643269 30.986803438424186 >100 0.3820701765858284 11.246242247531434 >500 0.0055247022673361925 0.7992855687187568 >1k 0.0023677295431440825 1.0204850364854219 >5k 4.735459086288166E-4 0.7013370681668618 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 6637 0.2118275544338089 TruSeq Adapter, Index 23 (95% over 24bp) CTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGCT 6539 0.20869977074622217 Illumina PCR Primer Index 5 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 6393 0.20404001137491945 TruSeq Adapter, Index 23 (95% over 24bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 4442 0.14177158306388116 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9149696046449503E-4 0.0 0.0 0.21731713396712443 0.0 2 1.9149696046449503E-4 0.0 0.0 0.795765619210209 0.0 3 1.9149696046449503E-4 0.0 0.0 1.1481200264648799 0.0 4 1.9149696046449503E-4 0.0 0.0 1.5876374668909734 0.0 5 1.9149696046449503E-4 0.0 0.0 2.704766901920683 0.0 6 1.9149696046449503E-4 0.0 0.0 3.5457896361206673 0.0 7 1.9149696046449503E-4 0.0 0.0 4.283052933908973 0.0 8 1.9149696046449503E-4 0.0 0.0 5.536177127028552 0.0 9 1.9149696046449503E-4 0.0 0.0 5.988620612285998 0.0 10 1.9149696046449503E-4 0.0 0.0 6.916965960457793 0.0 11 1.9149696046449503E-4 0.0 0.0 8.381502797930173 0.0 12 1.9149696046449503E-4 0.0 0.0 9.529112165833814 0.0 13 1.9149696046449503E-4 0.0 0.0 9.991481576875337 0.0 14 2.2341312054191087E-4 0.0 0.0 10.196096079131651 0.0 15 2.2341312054191087E-4 0.0 0.0 10.554259227520411 0.0 16 2.553292806193267E-4 0.0 0.0 11.259031874349908 0.0 17 2.553292806193267E-4 0.0 0.0 12.097756645024319 0.0 18 2.553292806193267E-4 0.0 0.0 13.031591572729429 0.0 19 2.553292806193267E-4 0.0 0.0 13.627593946015091 0.0 20 2.553292806193267E-4 0.0 0.0 14.194201535869455 0.0 21 2.553292806193267E-4 0.0 0.0 14.867728261983162 0.0 22 2.553292806193267E-4 0.0 0.0 15.597874256074205 0.0 23 2.553292806193267E-4 0.0 0.0 16.259751583759652 0.0 24 2.553292806193267E-4 0.0 0.0 16.787676787600187 0.0 25 2.553292806193267E-4 0.0 0.0 17.25821673562153 0.0 26 2.553292806193267E-4 0.0 0.0 17.710085729997584 0.0 27 2.553292806193267E-4 0.0 0.0 18.242670693209423 0.0 28 2.553292806193267E-4 0.0 0.0 18.732711415038064 0.0 29 2.553292806193267E-4 0.0 0.0 19.300340322014904 0.0 30 2.553292806193267E-4 0.0 0.0 19.904513232280387 0.0 31 2.553292806193267E-4 0.0 0.0 20.36924443916764 0.0 32 2.553292806193267E-4 0.0 0.0 20.894775931002368 0.0 33 2.553292806193267E-4 0.0 0.0 21.4328823899076 0.0 34 2.553292806193267E-4 0.0 0.0 22.010820216589444 0.0 35 2.8724544069674255E-4 0.0 0.0 22.631366116974643 0.0 36 2.8724544069674255E-4 0.0 0.0 23.19312245049724 0.0 37 2.8724544069674255E-4 0.0 0.0 23.815647152807234 0.0 38 2.8724544069674255E-4 0.0 0.0 24.5289414143774 0.0 39 2.8724544069674255E-4 0.0 0.0 25.773735489716774 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTAA 40 6.8212103E-9 45.0 31 ATACGTC 35 6.251741E-6 38.57143 32 CAATCGA 30 1.14037175E-4 37.499996 30 ACGGGAT 1720 0.0 36.75872 5 CGTAAGG 460 0.0 35.70652 2 TTACGGG 1280 0.0 35.33203 3 TGACGGG 1595 0.0 35.266457 3 GTTAGCG 205 0.0 35.121952 1 TACGGGA 1285 0.0 34.844357 4 TAACGGG 1350 0.0 34.833332 3 TAAGGGA 2865 0.0 34.790577 4 TACGTAG 175 0.0 34.714287 1 ATAACGG 345 0.0 34.56522 2 TCGAACG 85 0.0 34.411766 1 TATGGGA 1875 0.0 34.32 4 AACGAAT 475 0.0 34.105267 24 CGTATGG 390 0.0 34.03846 2 CGTTATT 405 0.0 33.88889 1 GATACGA 60 6.4392225E-9 33.75 9 TCGACGT 60 6.4392225E-9 33.75 26 >>END_MODULE