SRR2935082.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935082.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2055439
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	11405	0.5548693004268188	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	9913	0.4822814007129377	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	9713	0.472551119249951	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	4402	0.21416349500033816	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC	3516	0.17105834811930687	No Hit
ACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	3070	0.14935982045684645	No Hit
TGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCTT	2305	0.11214149386092216	Illumina Single End Adapter 2 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	2212	0.10761691298063333	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	2082	0.10129223002969195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACCGA	20	7.0345844E-4	45.000004	11
TTAGCCG	30	2.16634E-6	45.000004	1
CCGTTGT	20	7.0345844E-4	45.000004	29
TACCGGA	20	7.0345844E-4	45.000004	3
GGCGTAA	45	3.8562575E-10	45.0	8
GTACGAC	25	3.8918835E-5	45.0	9
TAGTACG	80	0.0	42.187504	1
CTAACGG	165	0.0	40.909092	2
CGGTTGT	240	0.0	40.312504	11
ACGCCTA	365	0.0	39.452053	25
TAGAACG	80	0.0	39.375004	1
TCATGCG	80	0.0	39.375004	1
TACACGG	120	0.0	39.375004	2
TCGCGCG	40	3.4599907E-7	39.375004	1
GCGCGAG	110	0.0	38.863636	1
TATACGC	255	0.0	38.82353	26
AACGTCG	35	6.250695E-6	38.571426	1
TTATCCG	35	6.250695E-6	38.571426	19
ATACGCA	275	0.0	38.454544	27
CTAACGC	205	0.0	38.414635	29