##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935080.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 577392 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.769331753817163 33.0 31.0 34.0 30.0 34.0 2 32.07848913736248 33.0 31.0 34.0 30.0 34.0 3 32.148141990190375 34.0 31.0 34.0 30.0 34.0 4 35.74127629063098 37.0 35.0 37.0 35.0 37.0 5 30.200033945742234 37.0 35.0 37.0 0.0 37.0 6 32.699639066699916 37.0 35.0 37.0 17.0 37.0 7 34.89815757752099 37.0 35.0 37.0 32.0 37.0 8 35.428403926621776 37.0 35.0 37.0 33.0 37.0 9 37.19790887300136 39.0 37.0 39.0 34.0 39.0 10 37.246551736082246 39.0 37.0 39.0 34.0 39.0 11 37.1757419569374 39.0 37.0 39.0 34.0 39.0 12 37.05141221215396 39.0 37.0 39.0 33.0 39.0 13 36.93705316318896 39.0 37.0 39.0 33.0 39.0 14 37.98910445589824 40.0 37.0 41.0 33.0 41.0 15 38.12504156621498 40.0 37.0 41.0 33.0 41.0 16 38.19727498822291 40.0 37.0 41.0 34.0 41.0 17 38.198717682267855 40.0 37.0 41.0 34.0 41.0 18 38.12112741430432 40.0 37.0 41.0 34.0 41.0 19 38.06082003214454 40.0 36.0 41.0 34.0 41.0 20 37.98101463130767 40.0 36.0 41.0 34.0 41.0 21 37.888155707041314 39.0 36.0 41.0 33.0 41.0 22 37.8527655388367 39.0 36.0 41.0 33.0 41.0 23 37.77685004295176 39.0 35.0 41.0 33.0 41.0 24 37.77034666223294 39.0 35.0 41.0 33.0 41.0 25 37.67723314489982 39.0 35.0 41.0 33.0 41.0 26 37.53909475711475 39.0 35.0 41.0 33.0 41.0 27 37.46584123091418 39.0 35.0 41.0 33.0 41.0 28 37.40822699310001 39.0 35.0 41.0 33.0 41.0 29 37.264553371020035 39.0 35.0 41.0 33.0 41.0 30 37.02692451575359 39.0 35.0 40.0 32.0 41.0 31 32.46411623299249 38.0 32.0 40.0 9.0 41.0 32 33.19893936874775 38.0 31.0 40.0 16.0 41.0 33 34.94363101670962 38.0 33.0 40.0 25.0 41.0 34 35.800851068251724 38.0 35.0 40.0 30.0 41.0 35 35.9157522099371 38.0 35.0 40.0 30.0 41.0 36 36.0431942250672 38.0 35.0 40.0 30.0 41.0 37 36.12087801701444 38.0 35.0 40.0 30.0 41.0 38 36.07472046720426 38.0 35.0 40.0 30.0 41.0 39 36.100145135367306 38.0 35.0 40.0 30.0 41.0 40 36.03711689805193 38.0 35.0 40.0 30.0 41.0 41 36.024794247235846 39.0 35.0 40.0 30.0 41.0 42 35.95314967994015 39.0 35.0 40.0 30.0 41.0 43 35.89737128328761 39.0 35.0 40.0 30.0 41.0 44 35.798611688419655 38.0 35.0 40.0 30.0 41.0 45 35.79612117937207 38.0 35.0 40.0 29.0 41.0 46 35.73357788123147 38.0 35.0 40.0 29.0 41.0 47 35.63996383739297 38.0 35.0 40.0 28.0 41.0 48 35.682962354864635 38.0 35.0 40.0 28.0 41.0 49 35.716618865519436 38.0 35.0 40.0 28.0 41.0 50 35.51252009033724 38.0 35.0 40.0 28.0 41.0 51 34.904615928173584 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 4.0 12 10.0 13 7.0 14 10.0 15 25.0 16 35.0 17 121.0 18 224.0 19 455.0 20 816.0 21 1394.0 22 2215.0 23 3574.0 24 4583.0 25 5047.0 26 5301.0 27 5745.0 28 6600.0 29 7936.0 30 9934.0 31 14019.0 32 20929.0 33 24706.0 34 42034.0 35 62419.0 36 67086.0 37 69554.0 38 110368.0 39 112182.0 40 56.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.67497990966276 23.096960124144427 23.765137029955387 11.462922936237426 2 30.59689084711946 27.298611688419655 23.284874054368608 18.819623410092277 3 28.75048493917477 27.150185662426914 26.47560063180647 17.62372876659185 4 26.841556516196967 28.83863995344584 25.253900296505666 19.065903233851525 5 20.07093967356666 40.632880261590046 21.7548909579627 17.541289106880594 6 23.859353783911104 33.429628398038076 25.902852827888157 16.808164990162663 7 71.49908554327044 9.027835508631918 12.35521101781805 7.117867930279602 8 68.14486518690941 8.406420594673984 13.113794441211516 10.334919777205087 9 61.81814088175798 10.753006622883587 17.06206528666833 10.366787208690111 10 34.321743287056286 27.736096101089036 22.052608972760275 15.88955163909441 11 26.174245573198107 27.19365699559398 26.36163992573503 20.270457505472887 12 24.412877213400947 23.041365311608057 32.8572269792446 19.688530495746388 13 21.305109873361598 28.915364258597283 32.12444924765151 17.655076620389615 14 15.394047718014797 34.22492864466428 29.224686175076897 21.15633746224402 15 13.653289273145456 29.67481364480284 37.34793693019647 19.32396015185524 16 14.511112034804777 31.75797378557375 31.1587275196054 22.572186660016072 17 14.920019674675093 29.35302186382908 26.666458835591765 29.06049962590406 18 16.295861390528447 28.809716795521933 31.872107684207606 23.022314129742014 19 17.612817635159477 30.40759137639593 28.770748468977747 23.20884251946684 20 19.937408207941917 30.595678499182533 28.740093385429656 20.726819907445897 21 18.486400919998893 31.627040208385292 30.60104746861751 19.28551140299831 22 16.336042065009558 29.692479286169537 25.896444703078668 28.075033945742234 23 16.814573114972152 30.245829523096962 27.60931914539862 25.33027821653227 24 20.156323606839027 27.272459611494444 27.976487377726052 24.594729403940477 25 16.2246792473744 31.434796464100646 25.397476930750685 26.94304735777427 26 15.425222379250144 34.55780474963283 27.01111203480478 23.005860836312245 27 20.53457616316125 33.86503449995843 25.374788705073847 20.22560063180647 28 17.174986837365257 31.449344639343806 27.713754260537037 23.6619142627539 29 16.52655388367002 32.851165239559954 27.0327611051071 23.589519771662925 30 19.260571674010034 35.90056668606423 23.19689223265996 21.641969407265773 31 23.885679053398732 33.008250893673626 19.75798071327625 23.3480893396514 32 20.471880455565717 32.389780253276804 22.424799789397845 24.713539501759637 33 20.863988416881426 33.1672416659739 22.589332723695513 23.379437193449164 34 19.365526366835702 26.951880178457614 25.422243467176546 28.260349987530137 35 17.34281043034888 28.496757835231524 24.227734364175465 29.93269737024413 36 23.9859575470391 31.03576080028819 23.49980602433009 21.478475628342615 37 22.61236733449719 26.9787250256325 28.009393964585584 22.39951367528473 38 21.128626652257047 27.858716435281405 25.885013993959046 25.127642918502506 39 24.428984121705877 25.303433369357386 26.599433313935766 23.66814919500097 40 22.152194696150968 24.710248843073686 27.393521212625043 25.744035248150304 41 19.10833541164408 26.17095491451215 22.958059689084713 31.762649984759054 42 24.893313381550144 23.824368886302548 26.059938482001826 25.222379250145483 43 25.739532241527417 23.59991132540804 27.906690775071358 22.753865657993185 44 21.75887438689833 24.22323135755258 27.08593122176961 26.93196303377948 45 20.853770055698728 22.499272591237844 27.10844625488403 29.5385110981794 46 23.098692049768616 24.263758417158535 28.187262726189488 24.450286806883366 47 18.148848615845043 22.585349294759887 32.05101560118602 27.214786488209054 48 18.437733809959266 20.532671044974645 31.396520907806135 29.633074237259954 49 22.548112893839885 18.07091196275667 34.23774489428326 25.14323024912018 50 20.25504336741763 18.82533876465209 32.66688835314656 28.25272951478372 51 17.662004322886357 19.102273671959434 27.867202870839915 35.3685191343143 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2354.0 1 2229.0 2 2104.0 3 2031.5 4 1959.0 5 1785.0 6 1611.0 7 1830.5 8 2050.0 9 2291.5 10 2533.0 11 2801.0 12 3069.0 13 3286.5 14 3504.0 15 3592.0 16 3680.0 17 3789.5 18 3899.0 19 3655.5 20 3412.0 21 3057.0 22 2702.0 23 2753.0 24 2804.0 25 2867.5 26 3279.5 27 3628.0 28 3955.5 29 4283.0 30 4910.5 31 5538.0 32 6548.5 33 7559.0 34 8199.0 35 8839.0 36 9485.0 37 10131.0 38 11767.0 39 13403.0 40 16763.0 41 20123.0 42 25656.0 43 31189.0 44 38379.0 45 45569.0 46 57491.0 47 69413.0 48 81751.0 49 94089.0 50 88580.5 51 83072.0 52 65759.5 53 48447.0 54 39286.5 55 30126.0 56 24060.0 57 17994.0 58 15651.0 59 13308.0 60 11894.5 61 10481.0 62 9399.5 63 8318.0 64 6695.0 65 5072.0 66 4050.0 67 3028.0 68 2632.0 69 2236.0 70 1670.5 71 1105.0 72 940.5 73 776.0 74 607.0 75 372.0 76 306.0 77 249.0 78 192.0 79 127.0 80 62.0 81 43.5 82 25.0 83 15.0 84 5.0 85 3.5 86 2.0 87 12.0 88 22.0 89 11.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 577392.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.846901836826643 #Duplication Level Percentage of deduplicated Percentage of total 1 68.4476529560304 21.798456846518775 2 13.049408879095479 8.311664872023353 3 5.849293580610723 5.5884563542946974 4 3.1023261647976916 3.951979073445239 5 1.9422985338030292 3.092809537191869 6 1.2149329243157692 2.3215109747407823 7 0.8277295882895747 1.8452436061986512 8 0.6147047162262493 1.5661152605033393 9 0.45968714786541315 1.3175650326348562 >10 3.9295408625362334 28.36361688185405 >50 0.4575867189151917 9.218521555272451 >100 0.09065397261527383 5.626601560292309 >500 0.006783630603864029 1.4429348899950294 >1k 0.0061669369126036615 3.3275685097571506 >5k 0.0012333873825207324 2.2269550452774793 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT 5744 0.9948180785324355 No Hit GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 5595 0.9690123867320642 No Hit CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 4854 0.840676697979882 No Hit TCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 2117 0.3666486546401751 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1868 0.3235237065979439 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC 1293 0.22393798320724914 No Hit AAAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC 1235 0.2138928145869704 No Hit ACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC 1225 0.21216088896278437 No Hit GCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG 1163 0.2014229500928312 No Hit TGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCTT 1133 0.19622717322027322 Illumina Single End Adapter 1 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG 1041 0.1802934574777621 No Hit CGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG 1014 0.1756172582924599 No Hit AGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG 878 0.15206306980353038 No Hit GAAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC 782 0.1354365838113448 No Hit CGTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC 741 0.12833568875218224 No Hit ACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG 738 0.12781611106492644 No Hit GGCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT 699 0.12106160113060105 No Hit GACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT 658 0.11396070607143846 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 631 0.10928450688613628 No Hit AAAAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT 611 0.10582065563776429 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0450439216338294 0.0 2 0.0 0.0 0.0 3.567593593260731 0.0 3 0.0 0.0 0.0 4.905159752819575 0.0 4 0.0 0.0 0.0 6.534208994928922 0.0 5 0.0 0.0 0.0 10.346004101199878 0.0 6 0.0 0.0 0.0 12.882582370382686 0.0 7 0.0 0.0 0.0 14.839658325712861 0.0 8 0.0 0.0 0.0 18.138457062099924 0.0 9 0.0 0.0 0.0 19.346994762656912 0.0 10 0.0 0.0 0.0 21.785546041510795 0.0 11 0.0 0.0 0.0 25.598033918031422 0.0 12 0.0 0.0 0.0 28.46731509962036 0.0 13 0.0 0.0 0.0 29.592200792529166 0.0 14 0.0 0.0 0.0 30.03193670850999 0.0 15 0.0 0.0 0.0 30.841611937816943 0.0 16 0.0 0.0 0.0 32.52781472552443 0.0 17 0.0 0.0 0.0 34.47969490398204 0.0 18 0.002424695873860393 0.0 0.0 37.17110732396708 0.0 19 0.002424695873860393 0.0 0.0 38.46485576523402 0.0 20 0.002424695873860393 0.0 0.0 39.566187269653895 0.0 21 0.002424695873860393 0.0 0.0 40.67825671294372 0.0 22 0.002424695873860393 0.0 0.0 41.669610940227784 0.0 23 0.002424695873860393 0.0 0.0 42.60104054091501 0.0 24 0.002424695873860393 0.0 0.0 43.28220688890736 0.0 25 0.002424695873860393 0.0 0.0 43.924924488042784 0.0 26 0.002424695873860393 0.0 0.0 44.53231080444481 0.0 27 0.002424695873860393 0.0 0.0 45.06643666694377 0.0 28 0.002424695873860393 0.0 0.0 45.60697065425222 0.0 29 0.002424695873860393 0.0 0.0 46.17019286723751 0.0 30 0.002424695873860393 0.0 0.0 46.83300080361349 0.0 31 0.002424695873860393 0.0 0.0 47.40869288109291 0.0 32 0.002424695873860393 0.0 0.0 48.02750990661457 0.0 33 0.002424695873860393 0.0 0.0 48.63143237176823 0.0 34 0.002424695873860393 0.0 0.0 49.198811206251555 0.0 35 0.002424695873860393 0.0 0.0 49.82039931277191 0.0 36 0.002424695873860393 0.0 0.0 50.425880510987334 0.0 37 0.002424695873860393 0.0 0.0 51.01248371989913 0.0 38 0.0025978884362789926 0.0 0.0 51.5736276221354 0.0 39 0.0025978884362789926 0.0 0.0 52.18343863441128 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAG 45 3.8380676E-10 45.000004 1 AACGTCA 20 7.030365E-4 45.000004 13 GCGACAG 20 7.030365E-4 45.000004 1 AATTTAC 20 7.030365E-4 45.000004 40 TTAGCCG 20 7.030365E-4 45.000004 1 GCGCGAG 20 7.030365E-4 45.000004 1 GACGTCA 20 7.030365E-4 45.000004 3 GAACTAC 20 7.030365E-4 45.000004 12 ATCAGCC 20 7.030365E-4 45.000004 22 AGGCGAA 20 7.030365E-4 45.000004 14 TGCGGCA 20 7.030365E-4 45.000004 24 GCGCATT 40 6.8048394E-9 45.000004 25 TAGCCGA 20 7.030365E-4 45.000004 5 TCCTACG 20 7.030365E-4 45.000004 27 ACCTCGG 20 7.030365E-4 45.000004 20 GCCGATA 20 7.030365E-4 45.000004 9 GTAGCCC 20 7.030365E-4 45.000004 21 GCCGAGT 20 7.030365E-4 45.000004 18 CGCTATT 20 7.030365E-4 45.000004 39 GAGCGAA 20 7.030365E-4 45.000004 23 >>END_MODULE