Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935079.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1910575 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGCT | 6860 | 0.35905421142849664 | No Hit |
CCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC | 6146 | 0.3216832628920613 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC | 5984 | 0.3132041401148869 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC | 2692 | 0.1408999908404538 | No Hit |
TCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC | 2431 | 0.1272391819216728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTCGA | 25 | 3.89178E-5 | 45.0 | 36 |
CGCTATA | 20 | 7.034461E-4 | 45.0 | 31 |
TATTACG | 35 | 1.212502E-7 | 45.0 | 1 |
ATCGAGT | 25 | 3.89178E-5 | 45.0 | 28 |
AACGTAC | 30 | 2.16626E-6 | 44.999996 | 33 |
TATAGCG | 85 | 0.0 | 42.35294 | 1 |
GTTTCGC | 265 | 0.0 | 41.60377 | 31 |
ACGTAAG | 65 | 0.0 | 41.53846 | 1 |
CGTTAGG | 325 | 0.0 | 39.461536 | 2 |
ACGGTTT | 280 | 0.0 | 39.375 | 28 |
GCTACGA | 180 | 0.0 | 38.750004 | 10 |
CGATTAC | 35 | 6.250464E-6 | 38.571426 | 9 |
CTATTCG | 35 | 6.250464E-6 | 38.571426 | 16 |
TAGTACG | 70 | 0.0 | 38.571426 | 1 |
AACGCTT | 215 | 0.0 | 37.67442 | 31 |
CACCGTA | 30 | 1.1402051E-4 | 37.499996 | 14 |
TACGTCA | 30 | 1.1402051E-4 | 37.499996 | 19 |
ACGCATC | 235 | 0.0 | 37.340427 | 29 |
TTACGCA | 310 | 0.0 | 37.01613 | 29 |
CGTAAGG | 225 | 0.0 | 37.000004 | 2 |