##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935073.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4151932 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18865554638178 33.0 31.0 34.0 30.0 34.0 2 32.51505226964218 34.0 31.0 34.0 31.0 34.0 3 32.560609614993695 34.0 31.0 34.0 31.0 34.0 4 36.03985831174499 37.0 35.0 37.0 35.0 37.0 5 30.529790468630026 37.0 35.0 37.0 0.0 37.0 6 32.995409366049344 37.0 35.0 37.0 17.0 37.0 7 35.168600786332725 37.0 35.0 37.0 32.0 37.0 8 35.716122759235944 37.0 35.0 37.0 35.0 37.0 9 37.62487800859937 39.0 37.0 39.0 35.0 39.0 10 37.50535365222745 39.0 37.0 39.0 35.0 39.0 11 37.40417256351983 39.0 37.0 39.0 35.0 39.0 12 37.282333862886 39.0 37.0 39.0 34.0 39.0 13 37.263089568904306 39.0 37.0 39.0 34.0 39.0 14 38.48964048544148 40.0 38.0 41.0 34.0 41.0 15 38.603716534856545 40.0 38.0 41.0 35.0 41.0 16 38.68566489046545 40.0 38.0 41.0 35.0 41.0 17 38.67814887141697 40.0 38.0 41.0 35.0 41.0 18 38.63389742413893 40.0 38.0 41.0 35.0 41.0 19 38.60663638036461 40.0 38.0 41.0 35.0 41.0 20 38.521367883674394 40.0 38.0 41.0 34.0 41.0 21 38.47544010836401 40.0 38.0 41.0 34.0 41.0 22 38.47587026955162 40.0 38.0 41.0 34.0 41.0 23 38.4077911198931 40.0 37.0 41.0 34.0 41.0 24 38.37707337210725 40.0 37.0 41.0 34.0 41.0 25 38.307090048680955 40.0 37.0 41.0 34.0 41.0 26 38.25366552246039 40.0 37.0 41.0 34.0 41.0 27 38.21120817971007 40.0 37.0 41.0 34.0 41.0 28 38.14192139948342 40.0 37.0 41.0 34.0 41.0 29 38.13098576758964 40.0 37.0 41.0 34.0 41.0 30 38.01560960054259 40.0 37.0 41.0 34.0 41.0 31 33.41819278350416 39.0 34.0 41.0 9.0 41.0 32 34.340772199544695 39.0 34.0 41.0 16.0 41.0 33 36.27733161333085 39.0 34.0 41.0 30.0 41.0 34 37.10128224643371 39.0 35.0 41.0 32.0 41.0 35 37.24235970145946 39.0 35.0 41.0 33.0 41.0 36 37.39857155656692 39.0 36.0 41.0 33.0 41.0 37 37.488908537037695 40.0 36.0 41.0 33.0 41.0 38 37.46113303397069 40.0 35.0 41.0 33.0 41.0 39 37.450165127945255 40.0 35.0 41.0 33.0 41.0 40 37.42757877537493 40.0 35.0 41.0 33.0 41.0 41 37.34915889759274 40.0 35.0 41.0 33.0 41.0 42 37.246673596773746 39.0 35.0 41.0 33.0 41.0 43 37.23153847413686 39.0 35.0 41.0 33.0 41.0 44 37.165607481047374 39.0 35.0 41.0 33.0 41.0 45 37.11886466348678 39.0 35.0 41.0 33.0 41.0 46 37.06298224537396 39.0 35.0 41.0 33.0 41.0 47 36.985007461586555 39.0 35.0 41.0 33.0 41.0 48 36.94735270230823 39.0 35.0 41.0 33.0 41.0 49 36.901507539140816 39.0 35.0 41.0 32.0 41.0 50 36.72669518672271 39.0 35.0 41.0 32.0 41.0 51 36.11360614769221 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 18.0 10 35.0 11 37.0 12 37.0 13 62.0 14 103.0 15 134.0 16 216.0 17 353.0 18 628.0 19 1245.0 20 1994.0 21 3224.0 22 5154.0 23 8351.0 24 12841.0 25 17737.0 26 23089.0 27 27519.0 28 33074.0 29 41372.0 30 54376.0 31 76347.0 32 114959.0 33 142299.0 34 263379.0 35 364272.0 36 485275.0 37 502368.0 38 716401.0 39 1253602.0 40 1423.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.93578603888503 21.514490121707194 25.660319099638436 11.889404739769342 2 31.859168213737604 23.776569558460977 26.291302458710785 18.07295976909063 3 31.674314511894703 23.77153575732936 26.919636448766504 17.634513282009436 4 28.18909365567644 25.818269663375993 26.795694149133464 19.196942531814106 5 22.813644346776393 39.35683436048567 21.07418907631435 16.755332216423582 6 27.147771206272164 33.559003374814424 23.58181685056499 15.711408568348423 7 81.99886221643322 5.676875247475151 7.607807642321696 4.716454893769936 8 83.70674182525147 4.701714767968261 7.149081439676758 4.442461967103507 9 77.59503286662691 6.476647498080412 9.38083764377644 6.547481991516239 10 41.77457626955355 25.06430741158574 17.240263087160386 15.920853231700328 11 30.547658294981712 24.95585187811361 23.8211271282863 20.675362698618375 12 27.112968131462654 22.228591412383437 28.87720704481673 21.78123341133718 13 24.82343159762732 22.89994152120025 30.716615782724766 21.560011098447664 14 20.990420845042742 25.42317648747619 30.453051735914748 23.133350931566316 15 20.715079148695114 24.676969661352835 32.19279602845133 22.415155161500717 16 23.581600084009082 24.320364591712966 29.2804169239766 22.817618400301352 17 23.78673350141573 24.803031456199186 27.34170501829028 24.068530024094805 18 24.223469941222543 23.879967205628606 29.026077498379067 22.87048535476978 19 24.3317809636574 26.288580834175512 26.659877859271297 22.71976034289579 20 25.371489706478815 26.240217807035375 26.896731449358995 21.491561037126814 21 24.931742620062177 25.465277369667906 27.834993444015943 21.767986566253974 22 23.84362267975487 24.020913637313907 27.463720504093036 24.67174317883819 23 23.076148645979753 25.038777128334473 27.849059184977015 24.036015040708758 24 22.930144327989957 24.2241924964089 28.664221861051676 24.181441314549467 25 22.972967765368026 26.514042137491657 26.68678099737664 23.826209099763677 26 22.52406831325754 25.951460669394393 27.611434869357204 23.913036147990862 27 23.59296828560776 24.87914060249542 28.00014547444419 23.52774563745264 28 21.297169606824003 25.56065465426698 28.460894831610922 24.6812809072981 29 22.595890298781388 24.229756171343848 27.98759709937446 25.186756430500306 30 24.030258684390784 24.71569861934155 27.87446904236389 23.379573653903773 31 25.69555570755976 26.141420427887546 25.465301454840784 22.69772240971191 32 23.413076129377842 25.96244350822701 26.916866653885467 23.70761370850968 33 23.75867427501221 25.22998931581731 26.31073919322378 24.700597215946697 34 22.062981763670503 24.291558724950217 29.03007563707691 24.615383874302374 35 22.628357111821675 24.947807430372173 27.51747860995797 24.906356847848183 36 23.15476265025535 25.383845400165512 26.543618729786516 24.917773219792615 37 22.34550084153594 26.162735805885067 28.004673486945354 23.487089865633635 38 22.02719119677297 25.784429995481624 26.913831922102773 25.274546885642636 39 22.2576140457021 24.82465994144413 26.778641846735447 26.139084166118327 40 23.084771137870273 23.183544431845224 29.534635923709736 24.19704850657477 41 21.010242942321792 23.9680225976726 28.136226701208017 26.885507758797587 42 21.845251800848374 23.906677662350926 28.488954058014436 25.75911647878626 43 22.403883300593556 23.775557981200077 28.58584870850486 25.234710009701505 44 22.39111815896792 24.037291554871324 27.922735728812516 25.648854557348244 45 22.058670517725243 23.432705545273862 27.766904660288272 26.741719276712622 46 22.266670070704432 24.420558910887753 27.98114227304301 25.33162874536481 47 21.443414776542582 24.116170496048586 29.59954546461744 24.840869262791397 48 21.11833719820074 23.835963594779493 29.05770133036861 25.987997876651157 49 22.137862566149927 23.46705100179868 29.189712162915963 25.205374269135426 50 20.94646540453938 23.413076129377842 29.424325831925955 26.216132634156818 51 20.71165905414636 23.03204869443912 28.331942816019147 27.924349435395378 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1159.0 1 2183.5 2 3208.0 3 9011.0 4 14814.0 5 11001.5 6 7189.0 7 6659.5 8 6130.0 9 6224.0 10 6318.0 11 6600.5 12 6883.0 13 7003.0 14 7123.0 15 7100.5 16 7078.0 17 6818.0 18 6558.0 19 7408.0 20 8258.0 21 9167.5 22 10077.0 23 11227.5 24 12378.0 25 16058.0 26 25321.0 27 30904.0 28 35634.5 29 40365.0 30 50035.5 31 59706.0 32 68217.0 33 76728.0 34 89885.5 35 103043.0 36 114299.0 37 125555.0 38 135807.5 39 146060.0 40 160321.0 41 174582.0 42 192987.5 43 211393.0 44 234954.0 45 258515.0 46 293197.0 47 327879.0 48 355753.0 49 383627.0 50 376193.5 51 368760.0 52 333228.5 53 297697.0 54 272965.0 55 248233.0 56 238476.5 57 228720.0 58 214567.0 59 200414.0 60 193688.5 61 186963.0 62 173838.0 63 160713.0 64 143103.5 65 125494.0 66 109547.0 67 93600.0 68 81004.0 69 68408.0 70 57250.0 71 46092.0 72 38368.5 73 30645.0 74 24996.0 75 15129.0 76 10911.0 77 8258.0 78 5605.0 79 4016.5 80 2428.0 81 2024.5 82 1621.0 83 1165.5 84 710.0 85 436.0 86 162.0 87 109.5 88 57.0 89 41.5 90 26.0 91 40.5 92 55.0 93 29.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4151932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.48496747976754 #Duplication Level Percentage of deduplicated Percentage of total 1 70.19692216697624 15.78375512104234 2 12.393931257987951 5.573542825646671 3 4.8401840192497385 3.264941408067627 4 2.4063095205957468 2.1642316526740153 5 1.4442770550211437 1.6237261306962423 6 0.8882024868887558 1.1982722419885397 7 0.6549952981234467 1.0309283584394442 8 0.4791459328929567 0.861886457532881 9 0.3667268423355176 0.7421257011484755 >10 3.862695587958112 21.562190090873383 >50 2.145398581630726 34.50631115661796 >100 0.312536949843897 9.026884881271128 >500 0.004939532226780444 0.7327053928562043 >1k 0.0033733390817025956 1.4097156404993656 >5k 3.614291873252781E-4 0.5187829406457216 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7336 0.17668882823707133 No Hit GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 5922 0.14263239378679612 TruSeq Adapter, Index 23 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGCT 5893 0.14193392377331804 TruSeq Adapter, Index 20 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 4824 0.11618687396614394 TruSeq Adapter, Index 23 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.225551863566166E-5 0.0 0.0 0.14940032736566977 0.0 2 7.225551863566166E-5 0.0 0.0 0.513110523004712 0.0 3 7.225551863566166E-5 0.0 0.0 0.7817083709463449 0.0 4 7.225551863566166E-5 0.0 0.0 1.1497298125306483 0.0 5 7.225551863566166E-5 0.0 0.0 2.1425688089303967 0.0 6 9.634069151421555E-5 0.0 0.0 3.0436432966628546 0.0 7 9.634069151421555E-5 0.0 0.0 3.747147111272535 0.0 8 9.634069151421555E-5 0.0 0.0 4.899140930053767 0.0 9 9.634069151421555E-5 0.0 0.0 5.3525443094925444 0.0 10 1.2042586439276944E-4 0.0 0.0 6.249114869896713 0.0 11 1.2042586439276944E-4 0.0 0.0 7.437742236626226 0.0 12 1.2042586439276944E-4 0.0 0.0 8.436963803838792 0.0 13 1.2042586439276944E-4 0.0 0.0 8.846387657601328 0.0 14 1.4451103727132332E-4 0.0 0.0 9.026424324868518 0.0 15 1.685962101498772E-4 0.0 0.0 9.327922518962257 0.0 16 1.685962101498772E-4 0.0 0.0 9.91996015348999 0.0 17 1.685962101498772E-4 0.0 0.0 10.605400088440755 0.0 18 1.926813830284311E-4 0.0 0.0 11.338071047406364 0.0 19 1.926813830284311E-4 0.0 0.0 11.835164930446838 0.0 20 1.926813830284311E-4 0.0 0.0 12.283558593926875 0.0 21 1.926813830284311E-4 0.0 0.0 12.81345648242794 0.0 22 2.16766555906985E-4 0.0 0.0 13.392175016353832 0.0 23 2.16766555906985E-4 0.0 0.0 13.949770853665234 0.0 24 2.16766555906985E-4 0.0 0.0 14.426199658375907 0.0 25 2.16766555906985E-4 0.0 0.0 14.847112139601515 0.0 26 2.16766555906985E-4 0.0 0.0 15.217325331917767 0.0 27 2.16766555906985E-4 0.0 0.0 15.606252703560656 0.0 28 2.4085172878553888E-4 0.0 0.0 15.984124980852288 0.0 29 2.4085172878553888E-4 0.0 0.0 16.412238928768584 0.0 30 2.4085172878553888E-4 0.0 0.0 16.88881224451653 0.0 31 2.4085172878553888E-4 0.0 0.0 17.282243543487706 0.0 32 2.4085172878553888E-4 0.0 0.0 17.7493273011215 0.0 33 2.4085172878553888E-4 0.0 0.0 18.199984970852125 0.0 34 2.4085172878553888E-4 0.0 0.0 18.655050227219522 0.0 35 2.4085172878553888E-4 0.0 0.0 19.163608652550185 0.0 36 2.6493690166409274E-4 0.0 0.0 19.629464066367177 0.0 37 2.6493690166409274E-4 0.0 0.0 20.099197193017613 0.0 38 2.6493690166409274E-4 0.0 0.0 20.588680161428464 0.0 39 2.6493690166409274E-4 0.0 0.0 21.185077212247215 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGG 895 0.0 38.96648 2 CGTTTTT 5045 0.0 38.087215 1 CGACGTA 25 0.002107741 36.000004 19 TACGGGT 670 0.0 35.932835 4 TACGGGA 1655 0.0 35.891243 4 TTACGGG 1440 0.0 35.15625 3 ACGGGCT 1365 0.0 35.109886 5 TACGGGC 1205 0.0 34.91701 4 TAAGGGA 3625 0.0 34.82069 4 CGTTAGG 565 0.0 34.64602 2 AACGGGA 1670 0.0 34.625748 4 ACGGGAG 2550 0.0 33.97059 5 TACGAAT 815 0.0 33.68098 12 AGTACGG 845 0.0 33.550297 2 ACGGGTA 785 0.0 33.53503 5 TAAGGGC 2805 0.0 33.208557 4 ACGGGAC 1335 0.0 33.202248 5 TATTACG 75 4.7293724E-11 33.000004 1 GCGTAAG 525 0.0 33.0 1 TTTACGG 540 0.0 32.916664 2 >>END_MODULE