FastQCFastQC Report
Sat 14 Jan 2017
SRR2935071.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935071.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1483655
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT75660.509956829586393Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC73460.4951285844755014No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC54490.3672686709511308No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC20560.13857669067269682No Hit
ACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC17480.11781714751744846No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC15830.1066959636842797No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTAT600.045.00000442
CCTTACG351.2122473E-745.01
CGTATCG253.8913568E-545.029
TTTCGAT207.033951E-445.039
TAGCGCG253.8913568E-545.01
CCGTACA253.8913568E-545.020
CGTAGTC253.8913568E-545.030
CTCGACC253.8913568E-545.028
ACCGTAC253.8913568E-545.019
AGTACGC207.033951E-445.030
CCCGAAT207.033951E-445.036
CCCCGAT650.041.5384640
GTAACGG1200.041.2500042
CGTAAGG2300.041.0869562
CTATCGG556.184564E-1140.909092
TCGTTAG451.9290383E-840.01
CTTACGG1900.039.0789452
ACGGGTA2450.038.571435
CATACGG1750.038.571432
ACGATTT356.2495183E-638.57142628