SRR2935071.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935071.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1483655
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	7566	0.509956829586393	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	7346	0.4951285844755014	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	5449	0.3672686709511308	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	2056	0.13857669067269682	No Hit
ACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	1748	0.11781714751744846	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	1583	0.1066959636842797	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTAT	60	0.0	45.000004	42
CCTTACG	35	1.2122473E-7	45.0	1
CGTATCG	25	3.8913568E-5	45.0	29
TTTCGAT	20	7.033951E-4	45.0	39
TAGCGCG	25	3.8913568E-5	45.0	1
CCGTACA	25	3.8913568E-5	45.0	20
CGTAGTC	25	3.8913568E-5	45.0	30
CTCGACC	25	3.8913568E-5	45.0	28
ACCGTAC	25	3.8913568E-5	45.0	19
AGTACGC	20	7.033951E-4	45.0	30
CCCGAAT	20	7.033951E-4	45.0	36
CCCCGAT	65	0.0	41.53846	40
GTAACGG	120	0.0	41.250004	2
CGTAAGG	230	0.0	41.086956	2
CTATCGG	55	6.184564E-11	40.90909	2
TCGTTAG	45	1.9290383E-8	40.0	1
CTTACGG	190	0.0	39.078945	2
ACGGGTA	245	0.0	38.57143	5
CATACGG	175	0.0	38.57143	2
ACGATTT	35	6.2495183E-6	38.571426	28