Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935071.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1483655 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT | 7566 | 0.509956829586393 | Illumina Single End Adapter 1 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC | 7346 | 0.4951285844755014 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC | 5449 | 0.3672686709511308 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC | 2056 | 0.13857669067269682 | No Hit |
ACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC | 1748 | 0.11781714751744846 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC | 1583 | 0.1066959636842797 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGTAT | 60 | 0.0 | 45.000004 | 42 |
CCTTACG | 35 | 1.2122473E-7 | 45.0 | 1 |
CGTATCG | 25 | 3.8913568E-5 | 45.0 | 29 |
TTTCGAT | 20 | 7.033951E-4 | 45.0 | 39 |
TAGCGCG | 25 | 3.8913568E-5 | 45.0 | 1 |
CCGTACA | 25 | 3.8913568E-5 | 45.0 | 20 |
CGTAGTC | 25 | 3.8913568E-5 | 45.0 | 30 |
CTCGACC | 25 | 3.8913568E-5 | 45.0 | 28 |
ACCGTAC | 25 | 3.8913568E-5 | 45.0 | 19 |
AGTACGC | 20 | 7.033951E-4 | 45.0 | 30 |
CCCGAAT | 20 | 7.033951E-4 | 45.0 | 36 |
CCCCGAT | 65 | 0.0 | 41.53846 | 40 |
GTAACGG | 120 | 0.0 | 41.250004 | 2 |
CGTAAGG | 230 | 0.0 | 41.086956 | 2 |
CTATCGG | 55 | 6.184564E-11 | 40.90909 | 2 |
TCGTTAG | 45 | 1.9290383E-8 | 40.0 | 1 |
CTTACGG | 190 | 0.0 | 39.078945 | 2 |
ACGGGTA | 245 | 0.0 | 38.57143 | 5 |
CATACGG | 175 | 0.0 | 38.57143 | 2 |
ACGATTT | 35 | 6.2495183E-6 | 38.571426 | 28 |