##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935070.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1064666 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.73192156037668 33.0 31.0 34.0 30.0 34.0 2 32.04591674759972 33.0 31.0 34.0 30.0 34.0 3 32.114706396184346 33.0 31.0 34.0 30.0 34.0 4 35.714688925916676 37.0 35.0 37.0 33.0 37.0 5 30.24382388467369 37.0 35.0 37.0 0.0 37.0 6 32.704124110284354 37.0 35.0 37.0 17.0 37.0 7 34.870248509861305 37.0 35.0 37.0 32.0 37.0 8 35.45996678770619 37.0 35.0 37.0 33.0 37.0 9 37.26881482079826 39.0 37.0 39.0 34.0 39.0 10 37.2306901882844 39.0 37.0 39.0 34.0 39.0 11 37.13842932901022 39.0 37.0 39.0 34.0 39.0 12 37.02358767914069 39.0 37.0 39.0 33.0 39.0 13 36.97498370380946 39.0 37.0 39.0 33.0 39.0 14 38.07903793302312 40.0 37.0 41.0 33.0 41.0 15 38.18505146214869 40.0 37.0 41.0 33.0 41.0 16 38.24368299541828 40.0 37.0 41.0 34.0 41.0 17 38.23627597763054 40.0 37.0 41.0 34.0 41.0 18 38.177579635303466 40.0 37.0 41.0 34.0 41.0 19 38.16599665998538 40.0 37.0 41.0 34.0 41.0 20 38.05140861077559 40.0 37.0 41.0 34.0 41.0 21 37.97075420836206 40.0 36.0 41.0 34.0 41.0 22 37.841483620215165 40.0 36.0 41.0 33.0 41.0 23 37.62099381402243 39.0 36.0 41.0 33.0 41.0 24 37.53442957697531 39.0 35.0 41.0 33.0 41.0 25 37.264642620314724 39.0 35.0 41.0 32.0 41.0 26 37.01153131592443 39.0 35.0 41.0 31.0 41.0 27 36.92779425660254 39.0 35.0 41.0 31.0 41.0 28 36.70312943214116 39.0 35.0 40.0 31.0 41.0 29 36.66309809837076 39.0 35.0 40.0 31.0 41.0 30 36.53315875589152 38.0 35.0 40.0 31.0 41.0 31 32.017185671374875 37.0 30.0 40.0 9.0 41.0 32 32.92229394007135 37.0 30.0 40.0 16.0 41.0 33 34.65674962852199 37.0 31.0 40.0 25.0 41.0 34 35.58853011179093 38.0 34.0 40.0 29.0 41.0 35 35.88799773825782 38.0 35.0 40.0 30.0 41.0 36 36.112232380859346 38.0 35.0 40.0 30.0 41.0 37 36.222461316506774 38.0 35.0 40.0 30.0 41.0 38 36.257708990425165 38.0 35.0 40.0 30.0 41.0 39 36.289349899405074 39.0 35.0 40.0 30.0 41.0 40 36.30240281928793 39.0 35.0 40.0 30.0 41.0 41 36.15318888740694 39.0 35.0 40.0 30.0 41.0 42 36.09162122205461 39.0 35.0 40.0 30.0 41.0 43 36.01084095857292 38.0 35.0 40.0 30.0 41.0 44 35.986360041552935 38.0 35.0 40.0 30.0 41.0 45 36.04903791423789 38.0 35.0 40.0 30.0 41.0 46 35.97728865202796 38.0 35.0 40.0 30.0 41.0 47 35.93650872668048 38.0 35.0 40.0 30.0 41.0 48 36.02992957415753 38.0 35.0 40.0 30.0 41.0 49 36.04506014092683 38.0 35.0 40.0 30.0 41.0 50 35.885124536709164 38.0 35.0 40.0 29.0 41.0 51 35.18856524017861 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 14.0 10 47.0 11 46.0 12 51.0 13 41.0 14 44.0 15 78.0 16 88.0 17 172.0 18 353.0 19 615.0 20 983.0 21 1517.0 22 2537.0 23 4279.0 24 5639.0 25 7178.0 26 8223.0 27 10140.0 28 12561.0 29 16179.0 30 21360.0 31 28795.0 32 40852.0 33 52617.0 34 82144.0 35 117058.0 36 126563.0 37 146334.0 38 212235.0 39 165787.0 40 134.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.771096287474194 21.34913672456902 24.84628982234804 13.033477165608746 2 31.22490997176579 24.482607691050525 25.95518218859248 18.3373001485912 3 29.47299904383159 24.025375094160985 28.129385178074628 18.3722406839328 4 26.85461919512786 26.604024172839182 27.118269955084507 19.42308667694845 5 21.00198559923957 38.371658341677104 22.35997016904832 18.266385890034996 6 25.523403583846953 31.49025140278735 26.391187471000293 16.5951575423654 7 73.05079715140711 7.349347119190432 12.005267379628917 7.594588349773544 8 71.30827884050022 5.870855272921273 12.90977639935905 9.911089487219465 9 65.24008468383512 7.96043078298734 16.095376390342135 10.704108142835405 10 37.18687362985199 23.66770423776095 21.768329222497947 17.37709290988911 11 24.93627109346969 25.23213852983001 26.98527049797777 22.84631987872253 12 22.081948705039892 21.035517242027076 34.4254442238223 22.45708982911073 13 22.11050226080292 24.216514850666783 34.551680996669376 19.121301891860924 14 16.545188819780098 29.237713987297425 31.651804415657114 22.56529277726536 15 14.405832439469279 26.068269297601315 37.724131323814234 21.80176693911518 16 15.881130795949153 28.514012845343046 31.68355146120943 23.92130489749837 17 16.394155537980925 27.263104109645653 28.08401883783271 28.258721514540706 18 18.592215774712447 25.23589557664094 32.62140427138652 23.550484377260098 19 19.61187827919742 26.868238489817465 28.994257353949504 24.525625877035615 20 19.479912009963687 27.754337980174064 30.18298696492609 22.582763044936158 21 19.577970931728824 28.003711962249195 31.46705163872989 20.95126546729209 22 17.32740596581463 27.509660306612588 28.023624310347095 27.139309417225682 23 16.817950418253236 27.26338588815647 29.03906013716978 26.879603556420513 24 20.759374301424106 24.666702984785836 28.85393165556146 25.71999105822859 25 17.927218489178767 27.481200677019835 26.822496444894455 27.769084388906943 26 15.906396935752621 27.097230492943325 29.900550970914825 27.09582160038923 27 19.044282432236965 25.740279111007585 28.683737435026575 26.531701021728882 28 15.798663618449355 24.31795511456175 32.3541843169595 27.5291969500294 29 16.11726118801577 22.071804678650395 33.046232339531834 28.764701793802 30 19.761126963761406 23.044598024169083 30.018522240777855 27.175752771291656 31 19.949730713669826 26.254430967082637 27.06388670249637 26.73195161675117 32 16.518044156571168 24.63937046923636 29.72782074378256 29.114764630409912 33 17.57461964597348 21.582355405357173 29.34666834481424 31.49635660385511 34 16.307555608989112 20.243249995773322 32.75881825849609 30.690376136741477 35 15.32264578750519 20.128753994210392 32.473564479376634 32.075035738907786 36 17.17430630826945 19.721677972246695 34.04926991187847 29.054745807605393 37 15.988770187082146 21.036926134581176 33.77059096467813 29.203712713658557 38 15.991494046020065 22.0976343754755 31.717740587188846 30.193130991315588 39 19.380444195644454 19.251201785348645 31.619869517764254 29.748484501242643 40 20.24954304918162 18.89118277469178 33.51285755344869 27.34641662267791 41 16.565007241707725 20.425372839932898 30.619649730525815 32.389970187833555 42 20.18304332062825 18.774150766531474 32.346576297167374 28.696229615672898 43 20.415886296735312 18.28301082217334 32.21864885325539 29.082454027835958 44 18.04143271223088 19.003330621997886 31.128259942554752 31.826976723216482 45 18.842341166149758 17.375120460313376 30.79444633340409 32.98809204013277 46 21.98924357498032 18.063599288415332 32.898486473692216 27.048670662912123 47 15.831631704215217 18.7391163050196 36.18120612473771 29.248045866027468 48 16.356397217531132 17.296879960475867 34.76958971170301 31.57713311028999 49 19.983262356457328 15.632508223236208 36.24225813541524 28.141971284891227 50 18.285171124089622 15.349696524543848 35.81047953066972 30.55465282069682 51 17.382070996913587 15.684637247737786 31.262386513704765 35.67090524164386 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1836.0 1 1917.0 2 1998.0 3 2293.0 4 2588.0 5 2244.5 6 1901.0 7 2058.0 8 2215.0 9 2477.0 10 2739.0 11 2864.0 12 2989.0 13 3208.0 14 3427.0 15 3516.0 16 3605.0 17 3624.5 18 3644.0 19 3818.5 20 3993.0 21 3858.0 22 3723.0 23 4207.5 24 4692.0 25 4621.5 26 5119.0 27 5687.0 28 6496.5 29 7306.0 30 8403.5 31 9501.0 32 11248.5 33 12996.0 34 15473.0 35 17950.0 36 19266.0 37 20582.0 38 23272.0 39 25962.0 40 30753.0 41 35544.0 42 45230.0 43 54916.0 44 67718.0 45 80520.0 46 101865.5 47 123211.0 48 145698.5 49 168186.0 50 160343.5 51 152501.0 52 121738.0 53 90975.0 54 74321.0 55 57667.0 56 49037.0 57 40407.0 58 36029.5 59 31652.0 60 28300.5 61 24949.0 62 21929.0 63 18909.0 64 16497.0 65 14085.0 66 11733.5 67 9382.0 68 7963.5 69 6545.0 70 5559.5 71 4574.0 72 3640.5 73 2707.0 74 2259.0 75 1519.5 76 1228.0 77 894.5 78 561.0 79 381.5 80 202.0 81 175.0 82 148.0 83 111.0 84 74.0 85 49.0 86 24.0 87 13.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1064666.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.560864614481105 #Duplication Level Percentage of deduplicated Percentage of total 1 67.60145934571794 20.659590468058344 2 12.966833695421851 7.925552980885577 3 5.96307955278006 5.467106006936758 4 3.2933809390416817 4.025942760078619 5 2.0081322589897783 3.068512904747936 6 1.311853716070493 2.4054830286500564 7 0.9092884161585588 1.9452048127216368 8 0.6761025794464127 1.652982351677062 9 0.5187291207766406 1.4267529388479356 >10 4.092156407414747 28.506031973106072 >50 0.5591901031756786 10.88553602200859 >100 0.0867174275225338 5.383399523437818 >500 0.007570569069423564 1.5760036190314015 >1k 0.0044735180864775605 2.4205842318994906 >5k 0.001032350327648668 2.6513163779127624 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGCT 9052 0.8502196933122689 TruSeq Adapter, Index 27 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 8239 0.7738577168802234 TruSeq Adapter, Index 16 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 7920 0.7438952685630986 TruSeq Adapter, Index 16 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 2923 0.27454619570832545 TruSeq Adapter, Index 16 (95% over 24bp) ACTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 2287 0.21480915141462203 TruSeq Adapter, Index 27 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTG 2087 0.19602391735999836 TruSeq Adapter, Index 27 (95% over 22bp) TGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGCTT 2013 0.18907338075978758 TruSeq Adapter, Index 16 (96% over 26bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCC 1943 0.18249854884066927 No Hit GCCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTG 1778 0.16700073074560473 TruSeq Adapter, Index 16 (95% over 23bp) ACCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTG 1650 0.15497818095064556 TruSeq Adapter, Index 27 (95% over 22bp) GGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTG 1568 0.14727623498824982 TruSeq Adapter, Index 16 (95% over 23bp) AAAACTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTC 1534 0.1440827451989638 TruSeq Adapter, Index 16 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1479 0.13891680583394228 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTC 1353 0.12708210837952935 No Hit GGCCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCT 1233 0.11581096794675513 TruSeq Adapter, Index 27 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTG 1169 0.10979969304927555 TruSeq Adapter, Index 27 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8785234054623703E-4 0.0 0.0 0.9127745227141657 0.0 2 1.8785234054623703E-4 0.0 0.0 3.0807783849582875 0.0 3 1.8785234054623703E-4 0.0 0.0 4.360992085780893 0.0 4 1.8785234054623703E-4 0.0 0.0 5.826616046722634 0.0 5 1.8785234054623703E-4 0.0 0.0 9.192460358459837 0.0 6 1.8785234054623703E-4 0.0 0.0 11.462749820131384 0.0 7 1.8785234054623703E-4 0.0 0.0 13.412657115001325 0.0 8 2.8177851081935556E-4 0.0 0.0 16.55364217510468 0.0 9 2.8177851081935556E-4 0.0 0.0 17.671551453695336 0.0 10 2.8177851081935556E-4 0.0 0.0 19.933669338553123 0.0 11 2.8177851081935556E-4 0.0 0.0 23.604491925167142 0.0 12 2.8177851081935556E-4 0.0 0.0 26.52803790108823 0.0 13 2.8177851081935556E-4 0.0 0.0 27.78711821359938 0.0 14 2.8177851081935556E-4 0.0 0.0 28.3328292628862 0.0 15 2.8177851081935556E-4 0.0 0.0 29.139561139362016 0.0 16 2.8177851081935556E-4 0.0 0.0 30.678917143968157 0.0 17 3.7570468109247407E-4 0.0 0.0 32.42218686423723 0.0 18 3.7570468109247407E-4 0.0 0.0 34.49278928790813 0.0 19 3.7570468109247407E-4 0.0 0.0 35.70763037422065 0.0 20 3.7570468109247407E-4 0.0 0.0 36.91617840712486 0.0 21 3.7570468109247407E-4 0.0 0.0 38.08640456255765 0.0 22 3.7570468109247407E-4 0.0 0.0 39.181771560282755 0.0 23 3.7570468109247407E-4 0.0 0.0 40.21993752031153 0.0 24 3.7570468109247407E-4 0.0 0.0 41.03502882594166 0.0 25 3.7570468109247407E-4 0.0 0.0 41.74651956576053 0.0 26 3.7570468109247407E-4 0.0 0.0 42.395173697666685 0.0 27 3.7570468109247407E-4 0.0 0.0 43.11793557791833 0.0 28 3.7570468109247407E-4 0.0 0.0 43.77898796430054 0.0 29 3.7570468109247407E-4 0.0 0.0 44.497429240719626 0.0 30 3.7570468109247407E-4 0.0 0.0 45.173321962004984 0.0 31 4.6963085136559257E-4 0.0 0.0 45.84254592520095 0.0 32 4.6963085136559257E-4 0.0 0.0 46.53778743756258 0.0 33 5.635570216387111E-4 0.0 0.0 47.21321052799657 0.0 34 5.635570216387111E-4 0.0 0.0 47.921319925685616 0.0 35 5.635570216387111E-4 0.0 0.0 48.61120764634167 0.0 36 5.635570216387111E-4 0.0 0.0 49.297432246357076 0.0 37 5.635570216387111E-4 0.0 0.0 49.9685347329585 0.0 38 5.635570216387111E-4 0.0 0.0 50.58929279229355 0.0 39 5.635570216387111E-4 0.0 0.0 51.289888096360734 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAC 30 2.1653505E-6 45.000004 43 TTCGTTA 30 2.1653505E-6 45.000004 42 CTACGCG 35 1.2118107E-7 45.000004 1 TATACGG 70 0.0 45.000004 2 GCTAACG 30 2.1653505E-6 45.000004 1 TGTTTCG 20 7.033053E-4 45.0 1 GTACCAT 25 3.8906117E-5 45.0 16 TACCCGT 20 7.033053E-4 45.0 44 GGTCGAC 20 7.033053E-4 45.0 27 CAGCACG 55 1.8189894E-12 45.0 1 ATTCGTG 20 7.033053E-4 45.0 20 CCTCGTC 20 7.033053E-4 45.0 36 ATCGTCA 20 7.033053E-4 45.0 10 CACTCGC 20 7.033053E-4 45.0 22 GGTATAC 20 7.033053E-4 45.0 8 TCCGTCG 25 3.8906117E-5 45.0 13 TTACGAC 20 7.033053E-4 45.0 13 TAGGCTA 25 3.8906117E-5 45.0 39 ACCGTCC 20 7.033053E-4 45.0 21 ACGTACA 25 3.8906117E-5 45.0 1 >>END_MODULE