SRR2935067.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935067.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1015911
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	9021	0.8879714856911679	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	7186	0.7073454269123969	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	6179	0.6082225706779433	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2464	0.24254093124299272	No Hit
ACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2160	0.2126170501156105	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	2035	0.20031282267836456	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1897	0.18672895558764496	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1794	0.17659027217935427	No Hit
ACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1487	0.14637108959347817	No Hit
GCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1485	0.14617422195448224	No Hit
GGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1446	0.1423353029940615	No Hit
AAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	1441	0.14184313389657166	No Hit
TGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCTT	1312	0.12914517118133378	Illumina Single End Adapter 1 (95% over 21bp)
AGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1260	0.12402661256743948	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	1186	0.11674250992458986	No Hit
GGCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1146	0.11280515714467113	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCA	20	7.032899E-4	45.000004	13
CTATACG	20	7.032899E-4	45.000004	1
TTGTCGT	20	7.032899E-4	45.000004	42
CCGTGCA	20	7.032899E-4	45.000004	45
GCTTGCG	20	7.032899E-4	45.000004	1
CGTTAGT	70	0.0	45.000004	28
CGAGGTT	20	7.032899E-4	45.000004	37
CACTACG	20	7.032899E-4	45.000004	1
CTCGCAC	20	7.032899E-4	45.000004	38
ACGTCAT	20	7.032899E-4	45.000004	10
CAATCGT	20	7.032899E-4	45.000004	15
TGCACGT	20	7.032899E-4	45.000004	28
AATCGTC	20	7.032899E-4	45.000004	12
AGTCGAC	20	7.032899E-4	45.000004	12
ACGAACG	20	7.032899E-4	45.000004	1
CGCCTAA	25	3.8904847E-5	45.0	14
AATTGCG	45	3.8380676E-10	45.0	1
TCCACCG	25	3.8904847E-5	45.0	31
TATTACG	25	3.8904847E-5	45.0	1
CACGTTA	45	3.8380676E-10	45.0	16