SRR2935065.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935065.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1575703
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	9408	0.5970668330262746	No Hit
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	7983	0.5066310085085832	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	7255	0.460429408333931	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC	3386	0.21488821180133563	No Hit
TGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCTT	2958	0.1877257325777764	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	2642	0.16767119184262516	No Hit
CGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG	2096	0.133019991711636	No Hit
ACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	2080	0.13200457192757772	No Hit
GCCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG	1822	0.11563092790963779	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC	1784	0.11321930592249935	No Hit
GGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG	1700	0.10788835205619333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAC	20	7.034085E-4	45.0	3
GGCCGTA	20	7.034085E-4	45.0	21
GCGCAAA	20	7.034085E-4	45.0	13
GTTCGTC	20	7.034085E-4	45.0	28
TGCGACG	50	2.1827873E-11	45.0	1
AACGCGA	210	0.0	45.0	30
GCGTAGT	20	7.034085E-4	45.0	1
TACGCTA	145	0.0	43.44828	31
TCGTAAG	65	0.0	41.53846	1
ATTGCGA	65	0.0	41.53846	29
CGGTATC	300	0.0	41.25	29
ACGGTAT	300	0.0	41.25	28
CGTATGG	160	0.0	40.78125	2
ACGTTAT	105	0.0	40.714287	28
ATATCGC	310	0.0	40.645164	31
ACGTTAG	50	1.0822987E-9	40.5	1
GATATCG	290	0.0	40.34483	30
TAACGCG	235	0.0	40.212765	29
ACGCTAA	235	0.0	40.212765	25
CTATCGT	90	0.0	40.0	25