##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935065.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1575703 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27405037624476 33.0 31.0 34.0 30.0 34.0 2 32.63067215077968 34.0 31.0 34.0 31.0 34.0 3 32.66743225087469 34.0 31.0 34.0 31.0 34.0 4 36.14763505559106 37.0 35.0 37.0 35.0 37.0 5 30.45988742802419 37.0 35.0 37.0 0.0 37.0 6 32.996037958930074 37.0 35.0 37.0 17.0 37.0 7 35.25356745528821 37.0 35.0 37.0 32.0 37.0 8 35.81376439595533 37.0 35.0 37.0 35.0 37.0 9 37.71869318012341 39.0 38.0 39.0 35.0 39.0 10 37.687287515477216 39.0 37.0 39.0 35.0 39.0 11 37.608692754916376 39.0 37.0 39.0 35.0 39.0 12 37.584908450386905 39.0 37.0 39.0 35.0 39.0 13 37.596941174828 39.0 37.0 39.0 35.0 39.0 14 38.87445095934957 40.0 38.0 41.0 35.0 41.0 15 38.95231715621535 40.0 38.0 41.0 35.0 41.0 16 38.99440249844038 40.0 38.0 41.0 35.0 41.0 17 38.975804450457986 40.0 38.0 41.0 35.0 41.0 18 38.92089118317348 40.0 38.0 41.0 35.0 41.0 19 38.90050472709641 40.0 38.0 41.0 35.0 41.0 20 38.82334361234319 40.0 38.0 41.0 35.0 41.0 21 38.77805208215 40.0 38.0 41.0 35.0 41.0 22 38.763160951016786 40.0 38.0 41.0 35.0 41.0 23 38.68865325508678 40.0 38.0 41.0 35.0 41.0 24 38.69151927742728 40.0 38.0 41.0 35.0 41.0 25 38.64155427767796 40.0 38.0 41.0 35.0 41.0 26 38.59057766596878 40.0 38.0 41.0 35.0 41.0 27 38.553300336421266 40.0 38.0 41.0 35.0 41.0 28 38.52926598476997 40.0 38.0 41.0 35.0 41.0 29 38.550980102214695 40.0 38.0 41.0 35.0 41.0 30 38.38835554669884 40.0 38.0 41.0 34.0 41.0 31 33.62701854346917 39.0 34.0 41.0 9.0 41.0 32 34.56138053935291 39.0 34.0 41.0 16.0 41.0 33 36.60139950231738 39.0 34.0 41.0 30.0 41.0 34 37.54248040398476 39.0 36.0 41.0 33.0 41.0 35 37.665054264667894 39.0 37.0 41.0 33.0 41.0 36 37.778125700084345 40.0 37.0 41.0 34.0 41.0 37 37.904207201484034 40.0 37.0 41.0 34.0 41.0 38 37.8993033585644 40.0 37.0 41.0 34.0 41.0 39 37.90655282118521 40.0 37.0 41.0 34.0 41.0 40 37.898462464055726 40.0 37.0 41.0 34.0 41.0 41 37.83527860263006 40.0 37.0 41.0 34.0 41.0 42 37.715855081826966 40.0 37.0 41.0 34.0 41.0 43 37.70094364229807 40.0 37.0 41.0 33.0 41.0 44 37.670521030930324 40.0 37.0 41.0 33.0 41.0 45 37.67098939330572 40.0 37.0 41.0 34.0 41.0 46 37.60912748151143 40.0 37.0 41.0 33.0 41.0 47 37.48973950040077 40.0 36.0 41.0 33.0 41.0 48 37.489457721410695 40.0 36.0 41.0 33.0 41.0 49 37.46621349327887 40.0 36.0 41.0 33.0 41.0 50 37.30768932977852 40.0 36.0 41.0 33.0 41.0 51 36.672962480873615 39.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 6.0 11 7.0 12 13.0 13 14.0 14 15.0 15 29.0 16 63.0 17 99.0 18 210.0 19 374.0 20 665.0 21 1212.0 22 2287.0 23 3957.0 24 5618.0 25 6785.0 26 7552.0 27 8132.0 28 9015.0 29 10803.0 30 13904.0 31 19727.0 32 31665.0 33 40090.0 34 79385.0 35 126331.0 36 186843.0 37 182775.0 38 315910.0 39 521825.0 40 391.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.98367712697126 21.523091597845536 26.068047087553936 12.425184187629268 2 31.214765726789885 25.17930092155692 25.57880514284735 18.02712820880585 3 30.726856520549877 25.57429921755559 27.112533262930892 16.58631099896364 4 28.125033715110014 26.73587598678177 26.515529893641126 18.623560404467085 5 21.778406209799687 39.14652697875171 21.612512002579166 17.462554808869438 6 26.306543809334627 32.943644836622134 24.940740736039725 15.80907061800352 7 78.18002504279042 6.190125931092344 9.919064696836905 5.710784329280328 8 76.80977950794026 5.532006983549565 10.441498175734894 7.2167153327752755 9 70.656081761601 8.255489771866907 13.001752233764865 8.086676232767216 10 33.95798573715986 31.901824138178327 19.75860933183474 14.381580792827076 11 22.877598126042788 24.552913842265962 32.293966566034335 20.275521465656915 12 21.583382147523995 21.781642860361377 35.52890360683454 21.106071385280096 13 21.87404606071068 24.108731150476963 36.20161921377316 17.815603575039205 14 18.32432888685241 28.471609180156417 32.027482336455535 21.176579596535642 15 16.841117901025765 27.558810258024515 35.680264618395725 19.919807222553995 16 18.96785117499935 28.6316647236186 31.174910500265597 21.225573601116455 17 18.532616870057364 27.545355945885742 29.44533328933181 24.476693894725084 18 19.115975535998853 26.247966780541766 32.652727068489426 21.983330614969955 19 19.08671875347067 28.155369381158756 30.847183764960782 21.910728100409784 20 20.57399141843355 29.32545029107643 30.063533546613797 20.037024743876223 21 19.83311575849002 29.318786598743547 31.71010019020082 19.137997452565617 22 18.507548694138425 26.106950358030666 29.968464869331342 25.417036078499567 23 17.502219644184215 27.712011717944307 30.629439685016784 24.156328952854693 24 20.05174833074507 25.62760875621865 30.938254226843508 23.382388686192765 25 17.773273262791275 29.037134536140375 28.547448345278266 24.64214385579008 26 17.17569871987297 28.709725119518083 31.650126959204876 22.464449201404072 27 19.401879668947767 28.493821487932685 30.257542189105436 21.84675665401411 28 16.319699841911834 27.423505571798746 32.14914231933302 24.1076522669564 29 17.86999199722283 25.349510662859686 31.366063274614568 25.414434065302917 30 20.99158280462752 28.004262224543584 28.926136460995505 22.078018509833388 31 22.120158430871808 28.46875331201375 26.43245586255786 22.978632394556588 32 19.910224198341947 27.748312975224394 27.593842240574524 24.74762058585914 33 20.916251349397697 28.139820765715367 26.528159177205353 24.415768707681586 34 19.57475488718369 24.125675968123435 30.341822031182275 25.957747113510603 35 20.709359568395822 25.192882161168694 28.40484532935458 25.692912941080902 36 20.966705019918095 29.00876624592325 28.975765102941352 21.048763631217305 37 18.980924704719097 27.532028561219974 30.622458674001386 22.864588060059543 38 20.879125063543068 26.9418158117361 27.45891833676778 24.72014078795306 39 22.61841222616191 25.07357033654185 27.251264990927858 25.056752446368385 40 23.19555144592604 22.791604763080354 29.816659611614625 24.19618417937898 41 20.681879770489743 26.495729207851987 27.025968726339926 25.796422295318344 42 21.2455012143786 26.400914385515545 29.884756200883032 22.468828199222823 43 21.35021637960961 25.00744112310505 30.433400202957028 23.20894229432831 44 19.985428726098764 24.21357324318098 29.186210853187433 26.614787177532822 45 20.967085802337117 21.738931765694424 29.017587705297252 28.276394726671207 46 24.010171967686805 22.55621776438834 29.340998906519822 24.092611361405037 47 18.99939265204166 23.9107877563221 32.48937141072905 24.60044818090719 48 19.20634789678004 23.488626981099863 31.326017656880772 25.979007465239324 49 21.125237433704193 21.573672195838935 32.86044387806585 24.440646492391018 50 20.095411381459577 20.390835074884038 32.516978136108136 26.996775407548252 51 19.35948589296333 19.947667802879096 29.12128745074421 31.571558853413368 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1930.0 1 2316.0 2 2702.0 3 3427.0 4 4152.0 5 3500.5 6 2849.0 7 3034.5 8 3220.0 9 3595.5 10 3971.0 11 4386.0 12 4801.0 13 4953.0 14 5105.0 15 5186.0 16 5267.0 17 5417.5 18 5568.0 19 5677.5 20 5787.0 21 6203.0 22 6619.0 23 7978.0 24 9337.0 25 10823.5 26 14314.5 27 16319.0 28 18708.0 29 21097.0 30 24158.0 31 27219.0 32 30843.0 33 34467.0 34 38148.5 35 41830.0 36 45016.5 37 48203.0 38 52803.5 39 57404.0 40 64212.0 41 71020.0 42 81399.0 43 91778.0 44 106936.0 45 122094.0 46 148983.0 47 175872.0 48 195453.5 49 215035.0 50 205273.5 51 195512.0 52 159664.5 53 123817.0 54 100814.0 55 77811.0 56 65443.0 57 53075.0 58 45880.5 59 38686.0 60 34313.5 61 29941.0 62 26205.5 63 22470.0 64 18583.0 65 14696.0 66 11625.0 67 8554.0 68 6848.5 69 5143.0 70 4516.5 71 3890.0 72 3148.5 73 2407.0 74 2048.5 75 1319.0 76 948.0 77 692.0 78 436.0 79 432.0 80 428.0 81 301.5 82 175.0 83 116.0 84 57.0 85 29.5 86 2.0 87 4.0 88 6.0 89 4.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1575703.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.80572788650034 #Duplication Level Percentage of deduplicated Percentage of total 1 64.98251888173213 19.36851275168278 2 14.466158966530923 8.623487954385553 3 6.34879942971102 5.676917646238055 4 3.4328590355814876 4.092754491490233 5 1.9810125809315355 2.952276096348953 6 1.2637032690986454 2.259935746082108 7 0.879131953431979 1.8342217446224736 8 0.6475210405418607 1.54398687481394 9 0.4839829599409819 1.2982917965133511 >10 4.98608545200757 34.524905973493674 >50 0.44151460412951593 8.320283131220464 >100 0.074392114245705 4.158446792453657 >500 0.007344443761961077 1.459258923315613 >1k 0.004264515732751593 2.1463428489803076 >5k 7.107526221252655E-4 1.7403772283588965 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 9408 0.5970668330262746 No Hit CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT 7983 0.5066310085085832 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 7255 0.460429408333931 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC 3386 0.21488821180133563 No Hit TGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCTT 2958 0.1877257325777764 Illumina Single End Adapter 1 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 2642 0.16767119184262516 No Hit CGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG 2096 0.133019991711636 No Hit ACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 2080 0.13200457192757772 No Hit GCCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG 1822 0.11563092790963779 No Hit CGTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC 1784 0.11321930592249935 No Hit GGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG 1700 0.10788835205619333 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5245912459391142 0.0 2 0.0 0.0 0.0 1.93380351500251 0.0 3 0.0 0.0 0.0 2.7649880719907243 0.0 4 0.0 0.0 0.0 3.7459470471275362 0.0 5 0.0 0.0 0.0 6.251939610446892 0.0 6 0.0 0.0 0.0 7.965079713626236 0.0 7 0.0 0.0 0.0 9.43229783785396 0.0 8 0.0 0.0 0.0 11.954346726508739 0.0 9 0.0 0.0 0.0 12.917408927951524 0.0 10 0.0 0.0 0.0 14.855401049563275 0.0 11 0.0 0.0 0.0 17.783744779314375 0.0 12 0.0 0.0 0.0 20.153734555306425 0.0 13 0.0 0.0 0.0 21.08931695884313 0.0 14 0.0 0.0 0.0 21.474859158102763 0.0 15 0.0 0.0 0.0 22.1374205672008 0.0 16 0.0 0.0 0.0 23.477330436002216 0.0 17 0.0 0.0 0.0 25.14725173462258 0.0 18 0.0 0.0 0.0 27.0830226254567 0.0 19 0.0 0.0 0.0 28.244980177101905 0.0 20 0.0 0.0 0.0 29.184814650984354 0.0 21 0.0 0.0 0.0 30.195918900960397 0.0 22 0.0 0.0 0.0 31.269534931392528 0.0 23 0.0 0.0 0.0 32.31433842545201 0.0 24 0.0 0.0 0.0 33.10268496030026 0.0 25 0.0 0.0 0.0 33.81214607067449 0.0 26 0.0 0.0 0.0 34.45649338739597 0.0 27 0.0 0.0 0.0 35.08294393042344 0.0 28 0.0 0.0 0.0 35.73750890872201 0.0 29 0.0 0.0 0.0 36.432944533328936 0.0 30 0.0 0.0 0.0 37.17946846582129 0.0 31 0.0 0.0 0.0 37.85427837606453 0.0 32 0.0 0.0 0.0 38.58480944695796 0.0 33 0.0 0.0 0.0 39.316292473898955 0.0 34 0.0 0.0 0.0 40.01122038861384 0.0 35 0.0 0.0 0.0 40.73743592542503 0.0 36 0.0 0.0 0.0 41.44391424018359 0.0 37 0.0 0.0 0.0 42.15451769781488 0.0 38 0.0 0.0 0.0 42.866961603804775 0.0 39 0.0 0.0 0.0 43.55776437564693 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGAC 20 7.034085E-4 45.0 3 GGCCGTA 20 7.034085E-4 45.0 21 GCGCAAA 20 7.034085E-4 45.0 13 GTTCGTC 20 7.034085E-4 45.0 28 TGCGACG 50 2.1827873E-11 45.0 1 AACGCGA 210 0.0 45.0 30 GCGTAGT 20 7.034085E-4 45.0 1 TACGCTA 145 0.0 43.44828 31 TCGTAAG 65 0.0 41.53846 1 ATTGCGA 65 0.0 41.53846 29 CGGTATC 300 0.0 41.25 29 ACGGTAT 300 0.0 41.25 28 CGTATGG 160 0.0 40.78125 2 ACGTTAT 105 0.0 40.714287 28 ATATCGC 310 0.0 40.645164 31 ACGTTAG 50 1.0822987E-9 40.5 1 GATATCG 290 0.0 40.34483 30 TAACGCG 235 0.0 40.212765 29 ACGCTAA 235 0.0 40.212765 25 CTATCGT 90 0.0 40.0 25 >>END_MODULE