SRR2935062.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935062.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1423318
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	6675	0.46897460722059303	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	6042	0.424501060198775	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	5230	0.3674512652829515	No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	2015	0.1415706117677146	No Hit
ACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1691	0.11880690049588356	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	1566	0.11002460448051665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTA	20	7.0338545E-4	45.0	42
TCGCAAG	20	7.0338545E-4	45.0	1
GACGTAC	25	3.891276E-5	45.0	34
ACGATTC	20	7.0338545E-4	45.0	30
TACGCGC	20	7.0338545E-4	45.0	34
TCGTCAA	20	7.0338545E-4	45.0	11
AATCTCG	20	7.0338545E-4	45.0	18
TCGTAAT	20	7.0338545E-4	45.0	21
TATAGCG	50	2.1827873E-11	45.0	1
TACCGGA	20	7.0338545E-4	45.0	3
TAACGCG	30	2.1658689E-6	44.999996	1
TACGGGT	170	0.0	42.35294	4
TTAACGG	145	0.0	41.896553	2
GGTAACG	140	0.0	41.785713	1
TTCGAAG	55	6.184564E-11	40.909092	1
TATACGG	105	0.0	40.714287	2
TATCGAG	50	1.0822987E-9	40.5	1
GCGTAAG	150	0.0	40.5	1
GTTAACG	95	0.0	40.263157	1
ACACGAT	45	1.9288564E-8	40.0	22