FastQCFastQC Report
Sat 14 Jan 2017
SRR2935061.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935061.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1557332
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT84220.5407966958875821Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC81100.5207624321596166No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC65860.42290275933455423No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC46450.29826652248846103No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG39230.25190518142566903No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC32290.2073417871076944No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC29420.1889128329733159No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC24670.15841195069516328No Hit
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC23030.14788111976123267No Hit
TGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCTT21140.1357449792337151Illumina Single End Adapter 1 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG16780.10774837992155814No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTAT406.8175723E-945.00000423
AGATTCG207.034058E-445.0000041
AGTTACG406.8175723E-945.0000041
CGGTCGT207.034058E-445.00000421
AATCGAC207.034058E-445.00000437
TGCGTAA207.034058E-445.00000429
TACGTCA253.891446E-545.032
TAGTACG850.045.01
CGGGTAT1600.042.1875046
GTACGTA650.041.53846412
AATCGTT501.0822987E-940.522
TACGGGA4850.040.3608254
TATACGG1300.039.8076932
CGTCTAG403.4592813E-739.37500415
ACGCATC2750.039.27272829
ATACGCA2750.039.27272827
GCGATAT1100.038.8636369
TACGGGT1400.038.5714264
TACGCAT2800.038.57142628
TATACGC2800.038.57142626