Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935061.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1557332 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT | 8422 | 0.5407966958875821 | Illumina Single End Adapter 1 (95% over 21bp) |
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC | 8110 | 0.5207624321596166 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC | 6586 | 0.42290275933455423 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC | 4645 | 0.29826652248846103 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG | 3923 | 0.25190518142566903 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC | 3229 | 0.2073417871076944 | No Hit |
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC | 2942 | 0.1889128329733159 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC | 2467 | 0.15841195069516328 | No Hit |
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC | 2303 | 0.14788111976123267 | No Hit |
TGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCTT | 2114 | 0.1357449792337151 | Illumina Single End Adapter 1 (95% over 22bp) |
GCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG | 1678 | 0.10774837992155814 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTAT | 40 | 6.8175723E-9 | 45.000004 | 23 |
AGATTCG | 20 | 7.034058E-4 | 45.000004 | 1 |
AGTTACG | 40 | 6.8175723E-9 | 45.000004 | 1 |
CGGTCGT | 20 | 7.034058E-4 | 45.000004 | 21 |
AATCGAC | 20 | 7.034058E-4 | 45.000004 | 37 |
TGCGTAA | 20 | 7.034058E-4 | 45.000004 | 29 |
TACGTCA | 25 | 3.891446E-5 | 45.0 | 32 |
TAGTACG | 85 | 0.0 | 45.0 | 1 |
CGGGTAT | 160 | 0.0 | 42.187504 | 6 |
GTACGTA | 65 | 0.0 | 41.538464 | 12 |
AATCGTT | 50 | 1.0822987E-9 | 40.5 | 22 |
TACGGGA | 485 | 0.0 | 40.360825 | 4 |
TATACGG | 130 | 0.0 | 39.807693 | 2 |
CGTCTAG | 40 | 3.4592813E-7 | 39.375004 | 15 |
ACGCATC | 275 | 0.0 | 39.272728 | 29 |
ATACGCA | 275 | 0.0 | 39.272728 | 27 |
GCGATAT | 110 | 0.0 | 38.863636 | 9 |
TACGGGT | 140 | 0.0 | 38.571426 | 4 |
TACGCAT | 280 | 0.0 | 38.571426 | 28 |
TATACGC | 280 | 0.0 | 38.571426 | 26 |