##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935059.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1045337 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.562812757990965 31.0 31.0 34.0 30.0 34.0 2 31.882119354810936 33.0 31.0 34.0 30.0 34.0 3 31.961360786043162 33.0 31.0 34.0 30.0 34.0 4 35.60669334386901 37.0 35.0 37.0 33.0 37.0 5 30.15426030074512 35.0 33.0 37.0 0.0 37.0 6 32.615074373144736 36.0 33.0 37.0 17.0 37.0 7 34.73746456884239 37.0 35.0 37.0 32.0 37.0 8 35.25034988716558 37.0 35.0 37.0 33.0 37.0 9 36.96891528760582 39.0 37.0 39.0 33.0 39.0 10 37.10047573174967 39.0 37.0 39.0 34.0 39.0 11 37.0557494855726 39.0 37.0 39.0 33.0 39.0 12 37.00506056898397 39.0 37.0 39.0 33.0 39.0 13 36.93462299717699 39.0 37.0 39.0 33.0 39.0 14 37.96404413122276 40.0 37.0 41.0 33.0 41.0 15 38.07788684414691 40.0 37.0 41.0 33.0 41.0 16 38.14048579548987 40.0 37.0 41.0 33.0 41.0 17 38.11705603073459 40.0 37.0 41.0 34.0 41.0 18 37.99716168087421 39.0 37.0 41.0 33.0 41.0 19 37.8846582489666 39.0 36.0 41.0 34.0 41.0 20 37.764408989636834 39.0 36.0 41.0 33.0 41.0 21 37.66436661095896 39.0 36.0 41.0 33.0 41.0 22 37.627723882346075 39.0 35.0 41.0 33.0 41.0 23 37.52878449724825 39.0 35.0 41.0 33.0 41.0 24 37.50482954300862 39.0 35.0 41.0 33.0 41.0 25 37.42643855522191 39.0 35.0 41.0 33.0 41.0 26 37.395250526863585 39.0 35.0 41.0 33.0 41.0 27 37.3661087285727 39.0 35.0 41.0 33.0 41.0 28 37.31641374982422 39.0 35.0 41.0 33.0 41.0 29 37.331626068913664 39.0 35.0 41.0 33.0 41.0 30 37.14252819904012 39.0 35.0 41.0 32.0 41.0 31 32.570159670996055 38.0 32.0 40.0 9.0 41.0 32 33.328031056013515 38.0 31.0 40.0 16.0 41.0 33 35.11255030674318 38.0 33.0 40.0 25.0 41.0 34 35.842028934209736 38.0 35.0 40.0 30.0 41.0 35 35.95282573945053 38.0 35.0 40.0 30.0 41.0 36 35.986470391844925 39.0 35.0 40.0 30.0 41.0 37 35.930662551885185 39.0 35.0 40.0 30.0 41.0 38 35.8670993182103 39.0 35.0 40.0 29.0 41.0 39 35.88382598147774 39.0 35.0 40.0 29.0 41.0 40 35.78873511604392 39.0 35.0 40.0 29.0 41.0 41 35.69811936246397 39.0 35.0 40.0 28.0 41.0 42 35.55877004257957 39.0 35.0 40.0 27.0 41.0 43 35.45350446793714 39.0 35.0 40.0 26.0 41.0 44 35.33921979227751 38.0 35.0 40.0 26.0 41.0 45 35.44396687384069 39.0 35.0 40.0 26.0 41.0 46 35.420004266566664 39.0 35.0 40.0 26.0 41.0 47 35.30102636757333 39.0 35.0 40.0 25.0 41.0 48 35.31386815926347 39.0 35.0 40.0 25.0 41.0 49 35.31691693683472 39.0 35.0 40.0 25.0 41.0 50 35.0783957709332 38.0 35.0 40.0 24.0 41.0 51 34.5333906673159 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 8.0 10 10.0 11 6.0 12 7.0 13 10.0 14 27.0 15 52.0 16 134.0 17 300.0 18 655.0 19 1171.0 20 1910.0 21 3140.0 22 5313.0 23 8502.0 24 10968.0 25 11943.0 26 11993.0 27 12673.0 28 13884.0 29 15969.0 30 19775.0 31 25593.0 32 36046.0 33 44022.0 34 70501.0 35 100630.0 36 123321.0 37 117985.0 38 191634.0 39 217092.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.683722091536026 23.24896181805485 22.84105508558484 13.226261004824282 2 29.17996779985784 27.971075356559655 23.880145828570118 18.96881101501238 3 27.307748601647123 29.167244630200596 27.03778781388203 16.48721895427025 4 25.911739467750593 29.210197285660033 26.385079644172166 18.492983602417212 5 18.87726159123804 40.22214845547417 22.334711198398217 18.56587875488957 6 22.20853179405302 33.063595759071 26.944707783231625 17.783164663644353 7 64.88491271235975 11.3932636078126 14.81914444815404 8.902679231673613 8 60.24124277625301 10.49680629309017 16.668021891504843 12.593929039151966 9 54.37251336171971 12.398872325384062 20.3377475397886 12.89086677310762 10 30.531302345559375 26.994930821352348 24.9614239235768 17.512342909511478 11 21.279931734933328 28.414473035968307 27.97825007629119 22.327345152807183 12 18.876304961940505 23.449758307607976 35.742062129246364 21.931874601205163 13 19.12435893879199 27.648882609149013 35.83973398052494 17.38702447153406 14 14.01031437708605 33.61815376285351 29.946610518904432 22.424921341156008 15 11.424641048771832 29.921833820098207 38.10971964065177 20.54380549047819 16 11.740233054029465 32.60699659535633 30.76261530970395 24.89015504091025 17 12.023108337311317 31.786112995139366 27.142347396102885 29.048431271446436 18 13.611399960012896 29.77881774011635 32.4546055482586 24.15517675161216 19 14.231869722395743 30.953367191632935 29.506465379107404 25.308297706863907 20 16.316173635870538 32.73661986517267 29.621547883601174 21.32565861535562 21 15.892578182920914 34.1440128877099 30.649541726735013 19.313867202634174 22 13.936940909964921 30.727985329133094 25.786229703913666 29.548844056988322 23 14.32887193316605 31.143927747702417 27.666293262364196 26.860907056767342 24 19.4292366959172 27.68762609569928 26.619932136717633 26.263205071665887 25 14.067042494430027 32.00728568873005 24.171630775529806 29.754041041310124 26 13.439589338175153 29.658091122767104 28.920816923154923 27.981502615902816 27 18.66422024667643 28.783827607747547 29.55381852933552 22.998133616240505 28 12.335639128816831 26.891901846007553 33.203837614090006 27.568621411085616 29 13.292842403932895 24.352816364483417 30.892334242450044 31.462006989133645 30 17.036228508127042 24.91330546991066 31.414462513046033 26.63600350891626 31 19.541927627167123 27.532269497779183 29.34603864591036 23.57976422914333 32 18.980099240723327 25.110945082781917 29.20541413917234 26.703541537322412 33 20.09859021540422 22.324953579563335 29.756336951624213 27.820119253408233 34 17.69687670100647 19.36188999337056 35.57331272116074 27.367920584462237 35 21.746479843342385 18.531631426037727 30.443388113115677 29.27850061750421 36 24.491431949696604 18.596012577762004 32.48368707890374 24.42886839363765 37 20.585992842499596 19.909655929140555 40.6779823157508 18.82636891260904 38 21.811147983855925 22.033372969673895 32.24089456318872 23.914584483281466 39 25.837218045472415 17.86285188412923 31.73809020440298 24.56183986599537 40 24.78999595345807 17.25367034745733 32.9796037067472 24.976729992337397 41 23.689202620781625 19.72206092389344 27.823945770598378 28.764790684726556 42 27.859149728747763 16.442066051426476 31.368161655045213 24.330622564780544 43 26.99215659638949 15.712636212054104 34.19174868965702 23.10345850189939 44 19.35299334090346 17.58475974733507 33.07402301841415 29.988223893347314 45 20.062142639168037 14.801925120798366 33.10052164995595 32.03541059007765 46 25.410083064121906 15.630366092465875 34.09465081595696 24.86490002745526 47 18.190880070254856 16.47392180703448 40.29896578806643 25.036232334644232 48 20.01737238804328 14.959864617821813 35.453064418460265 29.569698575674643 49 23.828679172362595 12.479898826885492 39.37495754957492 24.31646445117699 50 21.634075900881726 12.188605205785311 37.627578474692854 28.549740418640113 51 18.585585318418847 12.73311860194368 31.28617852424625 37.39511755539123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4655.0 1 4432.0 2 4209.0 3 4384.0 4 4559.0 5 4323.0 6 4087.0 7 4385.5 8 4684.0 9 5468.5 10 6253.0 11 6826.0 12 7399.0 13 7913.5 14 8428.0 15 8539.5 16 8651.0 17 8650.0 18 8649.0 19 8325.5 20 8002.0 21 7403.5 22 6805.0 23 6056.5 24 5308.0 25 4865.5 26 4916.5 27 5410.0 28 5925.0 29 6440.0 30 7088.5 31 7737.0 32 8081.5 33 8426.0 34 10165.0 35 11904.0 36 12709.0 37 13514.0 38 15899.0 39 18284.0 40 22459.0 41 26634.0 42 37607.5 43 48581.0 44 65967.0 45 83353.0 46 110858.0 47 138363.0 48 162535.0 49 186707.0 50 177056.0 51 167405.0 52 129207.0 53 91009.0 54 71040.5 55 51072.0 56 39580.0 57 28088.0 58 23233.5 59 18379.0 60 16186.0 61 13993.0 62 12650.0 63 11307.0 64 9784.5 65 8262.0 66 6671.5 67 5081.0 68 4114.0 69 3147.0 70 2879.5 71 2612.0 72 1987.0 73 1362.0 74 1225.5 75 802.0 76 515.0 77 362.5 78 210.0 79 211.0 80 212.0 81 159.5 82 107.0 83 62.0 84 17.0 85 10.0 86 3.0 87 2.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1045337.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.23272319020433 #Duplication Level Percentage of deduplicated Percentage of total 1 67.14119488091363 19.62719964613312 2 12.600985029629722 7.367222145901486 3 5.994006470039915 5.256633958169118 4 3.3854593375291913 3.9586478274273342 5 2.1840441605401004 3.1922779190125463 6 1.4817859686564052 2.5989983429316883 7 1.0625054723814764 2.1741949853543487 8 0.7767126686128764 1.8164341151908094 9 0.5875881458410042 1.5459121455493936 >10 4.2959602442610665 26.00327859912797 >50 0.34767653112952324 6.584508791069128 >100 0.11711593761857665 6.6934410793834695 >500 0.014685384027406958 2.90599682695113 >1k 0.009178365017129349 5.857928086887268 >5k 0.0 0.0 >10k+ 0.0011014038020555218 4.417325530911163 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT 15641 1.496263884278467 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 13106 1.2537583573527007 No Hit CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 12412 1.1873682841035953 No Hit TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 4644 0.44425864577643376 No Hit AAAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 4584 0.4385188699912086 No Hit ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 3888 0.37193747088259577 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3763 0.35997960466337653 No Hit TGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCTT 3512 0.33596820929518423 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC 2764 0.2644123378393762 No Hit GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 2514 0.2404966054009377 No Hit CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 2362 0.22595584007836705 No Hit GAAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 2353 0.2250948737105833 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT 2262 0.2163895471029917 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 2212 0.21160640061530397 No Hit ACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 2165 0.20711024291687752 No Hit GGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 1989 0.19027356728021683 No Hit AGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 1987 0.1900822414207093 No Hit CGTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT 1616 0.15459129448206654 No Hit GGCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT 1514 0.14483367564718364 No Hit TGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 1382 0.1322061689196881 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1305 0.12484012332864902 No Hit GACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT 1199 0.1146998527747511 No Hit GTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG 1188 0.11364756054745981 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 1157 0.11068200972509344 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC 1133 0.10838609941100336 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG 1070 0.10235933483651685 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.566292975375406E-5 0.0 0.0 1.5595927437754524 0.0 2 9.566292975375406E-5 0.0 0.0 4.96834991969097 0.0 3 9.566292975375406E-5 0.0 0.0 6.701475218039732 0.0 4 9.566292975375406E-5 0.0 0.0 8.744452745860904 0.0 5 9.566292975375406E-5 0.0 0.0 13.655500570629377 0.0 6 9.566292975375406E-5 0.0 0.0 16.745317538745876 0.0 7 9.566292975375406E-5 0.0 0.0 19.443586135380265 0.0 8 9.566292975375406E-5 0.0 0.0 23.80485910285391 0.0 9 9.566292975375406E-5 0.0 0.0 25.339962136612403 0.0 10 9.566292975375406E-5 0.0 0.0 28.450155308766455 0.0 11 9.566292975375406E-5 0.0 0.0 33.08291967088125 0.0 12 9.566292975375406E-5 0.0 0.0 36.93277861589134 0.0 13 9.566292975375406E-5 0.0 0.0 38.3307966713127 0.0 14 9.566292975375406E-5 0.0 0.0 38.83398368181744 0.0 15 9.566292975375406E-5 0.0 0.0 39.77922909071429 0.0 16 9.566292975375406E-5 0.0 0.0 41.66589339131782 0.0 17 9.566292975375406E-5 0.0 0.0 43.79841142138851 0.0 18 9.566292975375406E-5 0.0 0.0 46.79419172955707 0.0 19 9.566292975375406E-5 0.0 0.0 48.29916094044313 0.0 20 1.913258595075081E-4 0.0 0.0 49.58094853621368 0.0 21 2.8698878926126215E-4 0.0 0.0 50.78381421493739 0.0 22 2.8698878926126215E-4 0.0 0.0 51.76770744745475 0.0 23 2.8698878926126215E-4 0.0 0.0 52.698794742748035 0.0 24 2.8698878926126215E-4 0.0 0.0 53.44200004400495 0.0 25 2.8698878926126215E-4 0.0 0.0 54.07547996483431 0.0 26 2.8698878926126215E-4 0.0 0.0 54.652040442460184 0.0 27 2.8698878926126215E-4 0.0 0.0 55.16393277957252 0.0 28 2.8698878926126215E-4 0.0 0.0 55.67199859949471 0.0 29 2.8698878926126215E-4 0.0 0.0 56.236888199690625 0.0 30 2.8698878926126215E-4 0.0 0.0 56.79890791199393 0.0 31 4.783146487687703E-4 0.0 0.0 57.38063418782651 0.0 32 4.783146487687703E-4 0.0 0.0 57.92744349429897 0.0 33 4.783146487687703E-4 0.0 0.0 58.46114697939516 0.0 34 4.783146487687703E-4 0.0 0.0 59.003460128169195 0.0 35 5.739775785225243E-4 0.0 0.0 59.4955502388225 0.0 36 6.696405082762784E-4 0.0 0.0 60.01605223961268 0.0 37 6.696405082762784E-4 0.0 0.0 60.478008527393555 0.0 38 6.696405082762784E-4 0.0 0.0 60.96847236824105 0.0 39 6.696405082762784E-4 0.0 0.0 61.48715677336591 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCATCG 55 1.8189894E-12 45.000004 43 TATCACG 30 2.1653123E-6 45.000004 1 CGCATGT 55 1.8189894E-12 45.000004 38 CGCGCAT 55 1.8189894E-12 45.000004 36 CGCCCTA 30 2.1653123E-6 45.000004 17 TCAACGG 30 2.1653123E-6 45.000004 2 ACGGTGT 30 2.1653123E-6 45.000004 22 CTATGCG 20 7.0329936E-4 45.0 1 AAGTACG 40 6.8139343E-9 45.0 1 TTAGGCG 70 0.0 45.0 1 AGGTACG 40 6.8139343E-9 45.0 1 GGTACAT 20 7.0329936E-4 45.0 8 TCGCAAG 45 3.8562575E-10 45.0 1 AATCACG 25 3.8905637E-5 45.0 29 GATCGAC 20 7.0329936E-4 45.0 23 GGCACGT 20 7.0329936E-4 45.0 11 CGGCCAA 20 7.0329936E-4 45.0 7 TAGCGTG 25 3.8905637E-5 45.0 1 GCTATTA 40 6.8139343E-9 45.0 18 ATAGCCG 20 7.0329936E-4 45.0 1 >>END_MODULE