SRR2935058.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935058.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1010646
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	6889	0.6816432262137286	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	5596	0.5537052538673285	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	4246	0.4201273245033375	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	2433	0.2407371126982148	No Hit
ACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	2148	0.21253732761026115	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1313	0.12991690463327416	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1258	0.12447484084437083	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1176	0.11636121846818769	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1143	0.11309598019484568	No Hit
AAAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	1096	0.10844548932069191	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1074	0.10626866380513057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	30	2.1652413E-6	45.000004	18
AACGTAG	30	2.1652413E-6	45.000004	1
AATCCCG	35	1.211738E-7	45.000004	23
CGAGTTA	35	1.211738E-7	45.000004	6
CAACGTT	30	2.1652413E-6	45.000004	15
TAGCGCG	45	3.8380676E-10	45.000004	1
CTCCCGT	35	1.211738E-7	45.000004	21
GTTAGTG	45	3.8380676E-10	45.000004	1
TCGATTG	30	2.1652413E-6	45.000004	1
CGTTCGG	45	3.8380676E-10	45.000004	2
TCGGCCC	35	1.211738E-7	45.000004	14
GTTACGT	35	1.211738E-7	45.000004	35
TACGATA	70	0.0	45.000004	17
TTGCGCA	35	1.211738E-7	45.000004	15
GCGATAT	30	2.1652413E-6	45.000004	9
ACGTCCA	35	1.211738E-7	45.000004	36
ATGCGAG	30	2.1652413E-6	45.000004	1
TACTACG	45	3.8380676E-10	45.000004	1
GCGTGAA	35	1.211738E-7	45.000004	39
GTAAGTC	35	1.211738E-7	45.000004	19