FastQCFastQC Report
Sat 14 Jan 2017
SRR2935057.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935057.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences966392
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC78560.8129206367602381TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC72360.7487644765271236TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT51400.5318752638680784TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC36000.37251964006324556TruSeq Adapter, Index 23 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC25800.2669724087119926TruSeq Adapter, Index 20 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG15750.16297734252766993No Hit
CGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG15350.1588382354158561No Hit
GCCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG14540.15045654351443308No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13470.13938443199033104No Hit
AGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG13340.13803922217899153No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC12750.13193403918906615No Hit
AAAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC11880.12293148122087103No Hit
GGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG11570.11972367320921531No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC9890.10233942333959718No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTAA351.2116652E-745.00000424
AGGTACG302.1651413E-645.0000041
TCGTTGC302.1651413E-645.00000439
CAACGTT351.2116652E-745.00000421
TGGAACG302.1651413E-645.0000041
GCTATCA302.1651413E-645.00000430
ACCGAGC351.2116652E-745.0000042
TTGTACG302.1651413E-645.0000041
TTCCGGT302.1651413E-645.00000412
TGACGTA302.1651413E-645.00000416
CGTTCCG302.1651413E-645.00000440
CGTTAGT302.1651413E-645.00000414
AGACGCG302.1651413E-645.0000042
TAACCGA351.2116652E-745.00000428
TACGAGA351.2116652E-745.00000435
ACTACGT302.1651413E-645.00000410
ACTACCC351.2116652E-745.00000412
TTGCGAA453.8380676E-1045.00000426
GTCCGAC302.1651413E-645.00000419
CGTAATC302.1651413E-645.00000419