Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935057.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 966392 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC | 7856 | 0.8129206367602381 | TruSeq Adapter, Index 23 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC | 7236 | 0.7487644765271236 | TruSeq Adapter, Index 23 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT | 5140 | 0.5318752638680784 | TruSeq Adapter, Index 20 (95% over 22bp) |
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC | 3600 | 0.37251964006324556 | TruSeq Adapter, Index 23 (95% over 21bp) |
ACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC | 2580 | 0.2669724087119926 | TruSeq Adapter, Index 20 (95% over 21bp) |
ACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG | 1575 | 0.16297734252766993 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG | 1535 | 0.1588382354158561 | No Hit |
GCCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG | 1454 | 0.15045654351443308 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1347 | 0.13938443199033104 | No Hit |
AGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG | 1334 | 0.13803922217899153 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC | 1275 | 0.13193403918906615 | No Hit |
AAAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC | 1188 | 0.12293148122087103 | No Hit |
GGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG | 1157 | 0.11972367320921531 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC | 989 | 0.10233942333959718 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTAA | 35 | 1.2116652E-7 | 45.000004 | 24 |
AGGTACG | 30 | 2.1651413E-6 | 45.000004 | 1 |
TCGTTGC | 30 | 2.1651413E-6 | 45.000004 | 39 |
CAACGTT | 35 | 1.2116652E-7 | 45.000004 | 21 |
TGGAACG | 30 | 2.1651413E-6 | 45.000004 | 1 |
GCTATCA | 30 | 2.1651413E-6 | 45.000004 | 30 |
ACCGAGC | 35 | 1.2116652E-7 | 45.000004 | 2 |
TTGTACG | 30 | 2.1651413E-6 | 45.000004 | 1 |
TTCCGGT | 30 | 2.1651413E-6 | 45.000004 | 12 |
TGACGTA | 30 | 2.1651413E-6 | 45.000004 | 16 |
CGTTCCG | 30 | 2.1651413E-6 | 45.000004 | 40 |
CGTTAGT | 30 | 2.1651413E-6 | 45.000004 | 14 |
AGACGCG | 30 | 2.1651413E-6 | 45.000004 | 2 |
TAACCGA | 35 | 1.2116652E-7 | 45.000004 | 28 |
TACGAGA | 35 | 1.2116652E-7 | 45.000004 | 35 |
ACTACGT | 30 | 2.1651413E-6 | 45.000004 | 10 |
ACTACCC | 35 | 1.2116652E-7 | 45.000004 | 12 |
TTGCGAA | 45 | 3.8380676E-10 | 45.000004 | 26 |
GTCCGAC | 30 | 2.1651413E-6 | 45.000004 | 19 |
CGTAATC | 30 | 2.1651413E-6 | 45.000004 | 19 |