##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935057.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 966392 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15765755511221 33.0 31.0 34.0 30.0 34.0 2 32.32520861099844 34.0 31.0 34.0 30.0 34.0 3 32.34846521908294 34.0 31.0 34.0 30.0 34.0 4 35.89970943468075 37.0 35.0 37.0 35.0 37.0 5 35.81564313446303 37.0 35.0 37.0 35.0 37.0 6 35.74356782754824 37.0 35.0 37.0 35.0 37.0 7 36.055780676992356 37.0 35.0 37.0 35.0 37.0 8 35.842541122029154 37.0 35.0 37.0 35.0 37.0 9 37.61925388455202 39.0 38.0 39.0 35.0 39.0 10 37.35389262328331 39.0 37.0 39.0 34.0 39.0 11 37.26889709351899 39.0 37.0 39.0 34.0 39.0 12 37.07872685204348 39.0 35.0 39.0 34.0 39.0 13 36.88547814965356 39.0 35.0 39.0 33.0 39.0 14 37.940347188304536 40.0 37.0 41.0 33.0 41.0 15 38.042865628026725 40.0 36.0 41.0 33.0 41.0 16 38.130063162774526 40.0 36.0 41.0 34.0 41.0 17 38.181299100158114 40.0 36.0 41.0 34.0 41.0 18 38.19674831745296 40.0 36.0 41.0 34.0 41.0 19 38.15011817150804 40.0 36.0 41.0 34.0 41.0 20 38.11062695055423 40.0 36.0 41.0 34.0 41.0 21 38.02709666470749 40.0 36.0 41.0 34.0 41.0 22 37.95445430011838 40.0 36.0 41.0 34.0 41.0 23 37.74067148734675 39.0 35.0 41.0 33.0 41.0 24 37.531309240970536 39.0 35.0 41.0 33.0 41.0 25 37.49206533166665 39.0 35.0 41.0 33.0 41.0 26 37.640327113635045 39.0 35.0 41.0 33.0 41.0 27 37.70012375930264 39.0 35.0 41.0 33.0 41.0 28 37.70496444506991 39.0 36.0 41.0 33.0 41.0 29 37.738541916737724 40.0 36.0 41.0 34.0 41.0 30 37.60497499979304 39.0 36.0 41.0 33.0 41.0 31 37.51781885611636 39.0 35.0 41.0 33.0 41.0 32 37.40982334290847 39.0 35.0 41.0 33.0 41.0 33 37.33930744459805 39.0 35.0 41.0 33.0 41.0 34 37.27736881100009 39.0 35.0 41.0 33.0 41.0 35 37.18521986936978 39.0 35.0 41.0 33.0 41.0 36 37.15026304025695 39.0 35.0 41.0 33.0 41.0 37 37.12397660576661 39.0 35.0 41.0 33.0 41.0 38 37.02248569938493 39.0 35.0 41.0 32.0 41.0 39 36.98862883798707 39.0 35.0 41.0 32.0 41.0 40 36.91586540451494 39.0 35.0 41.0 32.0 41.0 41 36.88483658805123 39.0 35.0 41.0 32.0 41.0 42 36.92420053146135 39.0 35.0 41.0 32.0 41.0 43 36.8685698971018 39.0 35.0 41.0 32.0 41.0 44 36.70671321782465 39.0 35.0 41.0 31.0 41.0 45 36.69751198271509 39.0 35.0 41.0 31.0 41.0 46 36.543330242800025 39.0 35.0 41.0 31.0 41.0 47 36.49951365491436 39.0 35.0 40.0 31.0 41.0 48 36.493054578266374 39.0 35.0 40.0 31.0 41.0 49 36.47953521966242 39.0 35.0 40.0 31.0 41.0 50 36.39298855950794 39.0 35.0 40.0 31.0 41.0 51 35.34484867424399 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 6.0 10 10.0 11 13.0 12 12.0 13 13.0 14 18.0 15 31.0 16 58.0 17 98.0 18 221.0 19 404.0 20 771.0 21 1233.0 22 1875.0 23 2838.0 24 3958.0 25 5000.0 26 5670.0 27 6851.0 28 7985.0 29 9746.0 30 12583.0 31 16529.0 32 22187.0 33 32335.0 34 63813.0 35 98550.0 36 67858.0 37 107418.0 38 209342.0 39 288788.0 40 176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.79834270151243 22.43975529598755 26.714728598746678 11.047173403753343 2 29.318640882788767 25.290772274604922 27.167546916779113 18.2230399258272 3 29.804054669326735 24.132132716330435 28.467743938277636 17.596068676065197 4 27.936489540476327 26.96617935578937 26.9388612488514 18.158469854882906 5 24.34395152277751 29.17760080795371 26.339208106027368 20.139239563241418 6 24.599748342287604 33.95216433910877 25.573783723375193 15.874303595228437 7 76.80889328554045 6.569487330193131 10.13719070522107 6.484428679045356 8 77.3836083080158 4.579922019222014 9.62114752605568 8.415322146706512 9 73.21035356252949 6.648544276028775 12.240374506411476 7.9007276550302565 10 39.51264083311948 23.02492156392023 20.28886828533349 17.173569317626804 11 30.776330929891806 25.85306997574483 23.921348686661315 19.449250407702053 12 28.78986994925455 21.805023220390897 29.77249397759915 19.632612852755404 13 21.93364597389051 28.2928666628035 31.21693888194439 18.556548481361602 14 17.14221558125481 32.34805337792531 29.401423025025043 21.108308015794833 15 15.141474681081796 26.69982781314415 38.7562190084355 19.402478497338553 16 15.76792854245482 26.05143668407851 35.166785321070535 23.01384945239613 17 16.521763425193917 25.882354158560915 28.273205904022387 29.322676512222785 18 18.29733689848426 26.26128941464747 32.76610319621851 22.67527049064976 19 20.58367618937243 28.289037988725074 28.407519929800745 22.719765892101755 20 23.335354597306267 28.194769824253513 28.41828160829146 20.051593970148758 21 20.40672936034239 28.96454026937309 29.74879758938402 20.879932780900504 22 17.93247460657787 27.666516279108272 26.761086598398993 27.639922515914865 23 17.43309133353753 28.515757580774675 28.56304687952715 25.488104206160646 24 20.943468075066846 23.94990852573283 31.37732928252717 23.729294116673152 25 16.851753739683275 27.820387585989952 28.700465235639367 26.627393438687406 26 17.521461270374754 31.527992781397195 28.825259315060553 22.125286633167494 27 21.713238520186426 29.08809261666073 27.351633705577033 21.84703515757581 28 16.73130572272949 27.356704111789004 30.18236905934652 25.729621106134985 29 20.60323347047575 27.208420599508276 28.504685469250575 23.683660460765406 30 23.04675535393505 29.474271310192968 24.934084719244364 22.54488861662762 31 21.373521303984305 30.0538497835247 23.874990687009 24.697638225482 32 24.472677753954915 31.670895454432568 22.086585981672034 21.76984080994048 33 23.110911514168166 29.280664575037875 22.90871613175606 24.699707779037904 34 18.638916712886697 27.21628490302072 27.612707886654693 26.532090497437892 35 20.23371468306857 28.80083858310085 25.2890131540824 25.676433579748174 36 22.69917383422048 27.74091672944313 25.068605700378317 24.491303735958077 37 20.829021763425192 26.49545939949834 29.201090240813254 23.474428596263213 38 20.429494449457366 30.18764642091408 23.89899750825752 25.48386162137104 39 21.480620700502488 25.700026490285516 28.773830909196267 24.04552190001573 40 22.123527512644973 26.183474200945373 30.014735221318055 21.6782630650916 41 17.782535451452414 28.22881398024818 26.239352146954857 27.749298421344548 42 20.99893211036515 25.02421377660411 26.606801380806132 27.370052732224604 43 24.311045621238588 23.509921439747018 26.250217303123367 25.928815635891027 44 20.965094909726073 24.728371095787217 26.70231127741124 27.604222717075473 45 21.383041250341474 24.769141300838584 26.104831165820908 27.742986282999034 46 22.68127219596189 26.339415061382958 27.910309687994108 23.06900305466105 47 18.034814029917467 25.0199711918145 31.37319017541536 25.57202460285267 48 19.412308876729114 22.977632265167756 29.768768781198517 27.841290076904613 49 21.26756016192187 19.6437884419573 32.99240887755693 26.096242518563894 50 20.2041200672191 21.276976630601247 31.05996324472885 27.45894005745081 51 18.25284149703226 22.480835934072303 26.864874709227728 32.40144785966771 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1676.0 1 1615.5 2 1555.0 3 1817.5 4 2080.0 5 1627.5 6 1175.0 7 1321.5 8 1468.0 9 1606.0 10 1744.0 11 1861.0 12 1978.0 13 2139.5 14 2301.0 15 2351.0 16 2401.0 17 2377.0 18 2353.0 19 2376.5 20 2400.0 21 2376.5 22 2353.0 23 2847.5 24 3342.0 25 3521.5 26 4422.5 27 5144.0 28 6706.5 29 8269.0 30 9710.0 31 11151.0 32 13181.0 33 15211.0 34 17291.5 35 19372.0 36 21429.5 37 23487.0 38 25813.5 39 28140.0 40 33870.0 41 39600.0 42 51108.5 43 62617.0 44 71202.5 45 79788.0 46 94922.0 47 110056.0 48 126922.5 49 143789.0 50 137750.5 51 131712.0 52 105578.0 53 79444.0 54 66826.0 55 54208.0 56 45413.5 57 36619.0 58 31470.0 59 26321.0 60 24084.0 61 21847.0 62 18989.0 63 16131.0 64 13358.5 65 10586.0 66 7949.0 67 5312.0 68 3941.0 69 2570.0 70 2324.5 71 2079.0 72 1662.0 73 1245.0 74 857.0 75 396.0 76 323.0 77 229.5 78 136.0 79 126.0 80 116.0 81 96.5 82 77.0 83 46.5 84 16.0 85 18.5 86 21.0 87 12.5 88 4.0 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 966392.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.295010522038844 #Duplication Level Percentage of deduplicated Percentage of total 1 62.416068208743845 13.291508292494944 2 12.964342772255574 5.521516314930013 3 6.520022426378705 4.165318385209912 4 3.9476530997501555 3.3626125718615527 5 2.613096017808444 2.782295359716431 6 1.8261938226994658 2.333329000180047 7 1.3623223250198313 2.030746777199401 8 1.0455927902656355 1.781272757637973 9 0.7890048510765882 1.5121679945054074 >10 4.674454509414887 19.45849101253708 >50 1.1478999527417233 17.76348602510054 >100 0.6756967683583004 20.46147006945794 >500 0.011277957672163214 1.6433498300789926 >1k 0.004903459857462267 1.7798257627205765 >5k 0.00147103795723868 2.112609846369182 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 7856 0.8129206367602381 TruSeq Adapter, Index 23 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 7236 0.7487644765271236 TruSeq Adapter, Index 23 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT 5140 0.5318752638680784 TruSeq Adapter, Index 20 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 3600 0.37251964006324556 TruSeq Adapter, Index 23 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 2580 0.2669724087119926 TruSeq Adapter, Index 20 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG 1575 0.16297734252766993 No Hit CGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG 1535 0.1588382354158561 No Hit GCCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG 1454 0.15045654351443308 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1347 0.13938443199033104 No Hit AGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG 1334 0.13803922217899153 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC 1275 0.13193403918906615 No Hit AAAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC 1188 0.12293148122087103 No Hit GGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG 1157 0.11972367320921531 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC 989 0.10233942333959718 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5549507860164405 0.0 2 0.0 0.0 0.0 2.8724368579210093 0.0 3 0.0 0.0 0.0 4.030352072450931 0.0 4 0.0 0.0 0.0 5.389013981903823 0.0 5 0.0 0.0 0.0 8.597960248015298 0.0 6 0.0 0.0 0.0 10.25836306591942 0.0 7 0.0 0.0 0.0 12.045836472156227 0.0 8 0.0 0.0 0.0 14.683275523804005 0.0 9 0.0 0.0 0.0 15.536242021871042 0.0 10 0.0 0.0 0.0 17.66612306393265 0.0 11 0.0 0.0 0.0 20.794770652074934 0.0 12 0.0 0.0 0.0 23.015815528274242 0.0 13 0.0 0.0 0.0 23.925798226806513 0.0 14 0.0 0.0 0.0 24.241198188726727 0.0 15 0.0 0.0 0.0 24.811153238023493 0.0 16 0.0 0.0 0.0 26.27443107972748 0.0 17 0.0 0.0 0.0 27.875851621288255 0.0 18 0.0 0.0 0.0 29.867589963493074 0.0 19 0.0 0.0 0.0 30.935686553696637 0.0 20 0.0 0.0 0.0 31.857051796786397 0.0 21 0.0014486874891348439 0.0 0.0 33.11751339001151 0.0 22 0.0014486874891348439 0.0 0.0 34.33296219339564 0.0 23 0.0014486874891348439 0.0 0.0 35.568589143949865 0.0 24 0.0014486874891348439 0.0 0.0 36.468637985413785 0.0 25 0.0014486874891348439 0.0 0.0 37.25217096168014 0.0 26 0.0014486874891348439 0.0 0.0 37.95861306798897 0.0 27 0.0014486874891348439 0.0 0.0 38.59769120605303 0.0 28 0.0014486874891348439 0.0 0.0 39.2676056921001 0.0 29 0.0014486874891348439 0.0 0.0 39.974461709120106 0.0 30 0.0014486874891348439 0.0 0.0 40.77548241293388 0.0 31 0.0014486874891348439 0.0 0.0 41.57971092475931 0.0 32 0.0014486874891348439 0.0 0.0 42.27704699542215 0.0 33 0.0014486874891348439 0.0 0.0 42.93754501278984 0.0 34 0.0014486874891348439 0.0 0.0 43.55303024031656 0.0 35 0.0014486874891348439 0.0 0.0 44.2437437396005 0.0 36 0.0014486874891348439 0.0 0.0 44.90672522123528 0.0 37 0.0014486874891348439 0.0 0.0 45.535559069197596 0.0 38 0.0014486874891348439 0.0 0.0 46.11958708267453 0.0 39 0.0014486874891348439 0.0 0.0 46.7136524308976 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAA 35 1.2116652E-7 45.000004 24 AGGTACG 30 2.1651413E-6 45.000004 1 TCGTTGC 30 2.1651413E-6 45.000004 39 CAACGTT 35 1.2116652E-7 45.000004 21 TGGAACG 30 2.1651413E-6 45.000004 1 GCTATCA 30 2.1651413E-6 45.000004 30 ACCGAGC 35 1.2116652E-7 45.000004 2 TTGTACG 30 2.1651413E-6 45.000004 1 TTCCGGT 30 2.1651413E-6 45.000004 12 TGACGTA 30 2.1651413E-6 45.000004 16 CGTTCCG 30 2.1651413E-6 45.000004 40 CGTTAGT 30 2.1651413E-6 45.000004 14 AGACGCG 30 2.1651413E-6 45.000004 2 TAACCGA 35 1.2116652E-7 45.000004 28 TACGAGA 35 1.2116652E-7 45.000004 35 ACTACGT 30 2.1651413E-6 45.000004 10 ACTACCC 35 1.2116652E-7 45.000004 12 TTGCGAA 45 3.8380676E-10 45.000004 26 GTCCGAC 30 2.1651413E-6 45.000004 19 CGTAATC 30 2.1651413E-6 45.000004 19 >>END_MODULE