SRR2935055.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935055.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2826084
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGC	30505	1.0794088215353825	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTC	25979	0.9192578847620949	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCG	25572	0.9048563312343157	No Hit
GCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	13557	0.4797097326194126	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	7056	0.24967410735137383	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGAGACTTT	6512	0.2304248564444652	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCT	5980	0.21160022136638545	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	5522	0.19539405056608364	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTC	4343	0.15367554538364747	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTA	4321	0.15289708303079455	No Hit
GAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	3986	0.1410432244759887	No Hit
TCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	3353	0.11864473950526594	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGC	3064	0.10841857496097074	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2937	0.1039247241058652	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	20	7.035036E-4	45.0	1
ACTCGAT	20	7.035036E-4	45.0	33
CGTATTA	25	3.8922568E-5	44.999996	14
CGCGATC	25	3.8922568E-5	44.999996	16
TACGCTA	30	2.166631E-6	44.999996	13
ATCGCAA	30	2.166631E-6	44.999996	32
TATCGCG	70	0.0	41.785713	1
TCGGTAA	40	3.4606092E-7	39.375	11
GCGATAT	70	0.0	38.571426	9
ACCGTAT	35	6.2515264E-6	38.571426	31
TATCGAT	35	6.2515264E-6	38.571426	15
TACGGCT	3900	0.0	38.480774	7
CCGATGA	1645	0.0	38.161095	18
TGATCCG	785	0.0	38.121017	4
GTATACG	155	0.0	37.741936	1
CGTTTTT	2125	0.0	37.69412	1
ACCGCGT	30	1.1403437E-4	37.499996	23
ACGTCGA	30	1.1403437E-4	37.499996	29
TACAACG	115	0.0	37.173916	1
CGTAAGG	510	0.0	37.058823	2