FastQCFastQC Report
Sat 14 Jan 2017
SRR2935053.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935053.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6121140
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT668311.0918064282143523No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT385140.6291965222164498No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC284980.46556687153046655No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG238900.3902867766461803No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT216090.3530224762054127No Hit
CGTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT149720.2445949610693433No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC97120.15866325553736724No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC86940.14203236651996196No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT76570.12509107780576822No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG68720.11226666928055885No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC68330.11162953306083508No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT359200.043.5906141
CGTTCTG35100.039.2948721
CGTTTCT46250.038.4324341
CGTAAGG7850.038.121022
CGTTTTC27350.037.760511
GTTTTTT415950.037.605482
TACGGGA19900.035.050254
ACGATAG3400.034.4117621
ACGGGTA6000.034.1250045
CGGTCTA3950.033.60759731
ACAACGA11350.033.50220513
TTAACGG4400.033.2386362
GACCGAT24200.033.0991749
CACAACG11900.032.71008312
TGGGCGA24450.032.6687136
TACGGGT6700.032.5746274
GGGCGAT84550.032.4659967
ACGGGAT21800.031.9954155
CTAAGCG1550.031.9354861
AGGGCGA39750.031.8679266