Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935053.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6121140 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 66831 | 1.0918064282143523 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT | 38514 | 0.6291965222164498 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC | 28498 | 0.46556687153046655 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG | 23890 | 0.3902867766461803 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT | 21609 | 0.3530224762054127 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT | 14972 | 0.2445949610693433 | No Hit |
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC | 9712 | 0.15866325553736724 | No Hit |
CGTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC | 8694 | 0.14203236651996196 | No Hit |
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT | 7657 | 0.12509107780576822 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 6872 | 0.11226666928055885 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC | 6833 | 0.11162953306083508 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 35920 | 0.0 | 43.590614 | 1 |
CGTTCTG | 3510 | 0.0 | 39.294872 | 1 |
CGTTTCT | 4625 | 0.0 | 38.432434 | 1 |
CGTAAGG | 785 | 0.0 | 38.12102 | 2 |
CGTTTTC | 2735 | 0.0 | 37.76051 | 1 |
GTTTTTT | 41595 | 0.0 | 37.60548 | 2 |
TACGGGA | 1990 | 0.0 | 35.05025 | 4 |
ACGATAG | 340 | 0.0 | 34.411762 | 1 |
ACGGGTA | 600 | 0.0 | 34.125004 | 5 |
CGGTCTA | 395 | 0.0 | 33.607597 | 31 |
ACAACGA | 1135 | 0.0 | 33.502205 | 13 |
TTAACGG | 440 | 0.0 | 33.238636 | 2 |
GACCGAT | 2420 | 0.0 | 33.099174 | 9 |
CACAACG | 1190 | 0.0 | 32.710083 | 12 |
TGGGCGA | 2445 | 0.0 | 32.668713 | 6 |
TACGGGT | 670 | 0.0 | 32.574627 | 4 |
GGGCGAT | 8455 | 0.0 | 32.465996 | 7 |
ACGGGAT | 2180 | 0.0 | 31.995415 | 5 |
CTAAGCG | 155 | 0.0 | 31.935486 | 1 |
AGGGCGA | 3975 | 0.0 | 31.867926 | 6 |