SRR2935052.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935052.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2235748
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	10625	0.47523245016880256	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	7737	0.34605867924292	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	5720	0.2558427872908754	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	5621	0.2514147390493025	No Hit
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	4066	0.18186307222459774	No Hit
ACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	3016	0.1348989242079161	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2909	0.13011305388621616	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	2359	0.10551278587747814	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCGA	20	7.034718E-4	45.000004	1
AACGGTA	20	7.034718E-4	45.000004	25
AATGCGC	20	7.034718E-4	45.000004	28
TCCGTCG	20	7.034718E-4	45.000004	38
ATGCGAA	60	0.0	45.000004	26
CGTCGCA	20	7.034718E-4	45.000004	14
CGTTTCG	20	7.034718E-4	45.000004	28
CGTCAAT	20	7.034718E-4	45.000004	32
TGTCGAT	30	2.1664255E-6	45.000004	33
CCGTTAT	20	7.034718E-4	45.000004	39
ACGTTAT	25	3.8919934E-5	45.0	41
TTTAACG	25	3.8919934E-5	45.0	1
CGTAGTC	25	3.8919934E-5	45.0	29
AGTCGTA	25	3.8919934E-5	45.0	28
CGACGGT	145	0.0	43.448273	28
TCACGAC	155	0.0	42.09677	25
CGGTCTA	150	0.0	42.000004	31
CAATGCG	65	0.0	41.53846	1
AATCCGT	60	3.6379788E-12	41.250004	39
ATTAGCG	110	0.0	40.909092	1