SRR2935051.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935051.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2969689
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	29312	0.9870393835852845	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	26125	0.8797217486410193	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	25278	0.8512002435271843	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	10034	0.33788049859766456	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTCAGT	6445	0.21702609263124858	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	6388	0.21510669972512275	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCT	5324	0.17927803214410667	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	5219	0.1757423083696643	No Hit
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	4795	0.16146471903286844	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTC	4185	0.14092384758134607	No Hit
GAACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCT	4043	0.13614220209590971	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTA	4010	0.1350309746239421	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	3267	0.11001151972479273	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3006	0.10122272062832169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	40	6.8212103E-9	45.0	1
TATTACG	20	7.035094E-4	45.0	15
TTAGTCG	20	7.035094E-4	45.0	1
CACGTAT	45	3.8562575E-10	45.0	11
TACGGCT	3350	0.0	40.164177	7
TACGATA	40	3.460682E-7	39.375	24
TACGTAG	120	0.0	39.374996	1
ATGCGAT	35	6.251632E-6	38.57143	31
ATCCGGC	790	0.0	38.449368	6
TGCGTAG	195	0.0	38.076923	1
CGTTAGG	245	0.0	37.65306	2
GCGAACC	60	1.5643309E-10	37.499996	33
CTATACG	30	1.1403575E-4	37.499996	43
ACTCGAA	30	1.1403575E-4	37.499996	37
AACTCGA	30	1.1403575E-4	37.499996	36
CGTTACG	85	0.0	37.058823	45
TATAACG	85	0.0	37.058823	1
ACGGCTG	3670	0.0	36.907356	8
CCGATGA	1640	0.0	36.493904	18
TGATCCG	840	0.0	36.42857	4