FastQCFastQC Report
Sat 14 Jan 2017
SRR2935048.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935048.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2351230
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC89200.37937590112409253Illumina PCR Primer Index 5 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC61180.2602042335288339Illumina PCR Primer Index 5 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT45720.19445141479140707Illumina PCR Primer Index 5 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC28390.1207453120281725Illumina PCR Primer Index 5 (95% over 23bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTCGCG207.034793E-445.0000041
TCCAACG207.034793E-445.00000421
CGTAACG207.034793E-445.00000439
CGCCGAT207.034793E-445.00000440
TGCGTAC453.8562575E-1045.024
TCGTGAA302.1664746E-644.99999632
GTCGTAC253.892056E-544.99999631
CGTACTA302.1664746E-644.99999615
GCGCTTA253.892056E-544.99999618
GCCCGTA253.892056E-544.99999636
GTACGAC302.1664746E-644.99999634
ACCCGTA750.042.033
TCGTTAG1100.040.9090921
ATTCGAC501.0822987E-940.49999611
ATTAGCG850.039.7058831
CCGTACA403.4602817E-739.37500435
CGTAGAC403.4602817E-739.37500435
TCGTAGA403.4602817E-739.37500420
CGCGTAA403.4602817E-739.37500431
GTCAACG1150.039.1304321