Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935048.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2351230 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC | 8920 | 0.37937590112409253 | Illumina PCR Primer Index 5 (95% over 23bp) |
CCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC | 6118 | 0.2602042335288339 | Illumina PCR Primer Index 5 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT | 4572 | 0.19445141479140707 | Illumina PCR Primer Index 5 (95% over 24bp) |
TCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC | 2839 | 0.1207453120281725 | Illumina PCR Primer Index 5 (95% over 23bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTCGCG | 20 | 7.034793E-4 | 45.000004 | 1 |
TCCAACG | 20 | 7.034793E-4 | 45.000004 | 21 |
CGTAACG | 20 | 7.034793E-4 | 45.000004 | 39 |
CGCCGAT | 20 | 7.034793E-4 | 45.000004 | 40 |
TGCGTAC | 45 | 3.8562575E-10 | 45.0 | 24 |
TCGTGAA | 30 | 2.1664746E-6 | 44.999996 | 32 |
GTCGTAC | 25 | 3.892056E-5 | 44.999996 | 31 |
CGTACTA | 30 | 2.1664746E-6 | 44.999996 | 15 |
GCGCTTA | 25 | 3.892056E-5 | 44.999996 | 18 |
GCCCGTA | 25 | 3.892056E-5 | 44.999996 | 36 |
GTACGAC | 30 | 2.1664746E-6 | 44.999996 | 34 |
ACCCGTA | 75 | 0.0 | 42.0 | 33 |
TCGTTAG | 110 | 0.0 | 40.909092 | 1 |
ATTCGAC | 50 | 1.0822987E-9 | 40.499996 | 11 |
ATTAGCG | 85 | 0.0 | 39.705883 | 1 |
CCGTACA | 40 | 3.4602817E-7 | 39.375004 | 35 |
CGTAGAC | 40 | 3.4602817E-7 | 39.375004 | 35 |
TCGTAGA | 40 | 3.4602817E-7 | 39.375004 | 20 |
CGCGTAA | 40 | 3.4602817E-7 | 39.375004 | 31 |
GTCAACG | 115 | 0.0 | 39.130432 | 1 |