SRR2935047.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935047.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1229529
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	9935	0.8080329947483955	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	7459	0.6066550687295704	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	5847	0.4755479537286229	No Hit
TCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	3677	0.2990576066119628	No Hit
ACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	2730	0.22203624314676593	No Hit
GCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1805	0.1468041827398947	No Hit
ACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1691	0.1375323396194803	No Hit
AGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1676	0.13631236026153104	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1399	0.11378340811806797	No Hit
CGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1388	0.11288875658890518	No Hit
GGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1316	0.10703285567074872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	30	2.1656251E-6	45.000004	1
CTCCCGG	30	2.1656251E-6	45.000004	2
TTCGTTC	30	2.1656251E-6	45.000004	14
GTTAGGT	75	0.0	45.000004	10
AGGCGTA	30	2.1656251E-6	45.000004	42
GGAACGT	60	0.0	45.000004	8
TTACGCG	30	2.1656251E-6	45.000004	1
GCGGATA	30	2.1656251E-6	45.000004	1
GGCGAGT	30	2.1656251E-6	45.000004	2
CCTGCGT	30	2.1656251E-6	45.000004	43
CCGTTAG	30	2.1656251E-6	45.000004	45
GTACGAG	75	0.0	45.000004	1
CGAACTT	20	7.0334796E-4	45.0	24
AAATCCG	20	7.0334796E-4	45.0	1
CGAACCG	20	7.0334796E-4	45.0	2
CGTATTA	35	1.212029E-7	45.0	45
GCGACCG	45	3.8562575E-10	45.0	14
GATCGTC	35	1.212029E-7	45.0	20
ATTAGCG	20	7.0334796E-4	45.0	1
CGTATAG	20	7.0334796E-4	45.0	14