SRR2935046.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935046.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1437034
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	7161	0.4983180634557011	No Hit
GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	6622	0.4608102522278526	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	4585	0.3190599526524773	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	3001	0.2088329155747185	No Hit
ACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	2249	0.15650290807315623	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	1606	0.1117579681482832	No Hit
ACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTG	1594	0.11092291483708806	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTG	1562	0.10869610600723434	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTG	1540	0.10716517493670992	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAC	20	7.033876E-4	45.000004	33
AGCCGAA	20	7.033876E-4	45.000004	45
CCCCTAG	30	2.1658816E-6	45.000004	14
CGAACTA	20	7.033876E-4	45.000004	21
TACCCGT	20	7.033876E-4	45.000004	33
CGAACGC	30	2.1658816E-6	45.000004	22
CGTATCG	20	7.033876E-4	45.000004	40
CTCGTAG	30	2.1658816E-6	45.000004	1
GCGAAGT	20	7.033876E-4	45.000004	2
CGGCACA	20	7.033876E-4	45.000004	28
CGTCTAT	40	6.8175723E-9	45.000004	3
CGTCTAA	30	2.1658816E-6	45.000004	29
CCGCTAT	20	7.033876E-4	45.000004	26
TACGCGT	20	7.033876E-4	45.000004	22
CGCTATA	30	2.1658816E-6	45.000004	22
CGTAGGC	20	7.033876E-4	45.000004	33
TATTACG	20	7.033876E-4	45.000004	1
CGTACTC	20	7.033876E-4	45.000004	36
AATTACG	20	7.033876E-4	45.000004	1
TTACGGT	30	2.1658816E-6	45.000004	24