SRR2935043.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935043.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1377403
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	4570	0.3317837989317578	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	4331	0.3144323048519569	TruSeq Adapter, Index 15 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	2836	0.2058947163611521	TruSeq Adapter, Index 14 (95% over 22bp)
ACAATCGGGAAGGGAACTGTGGTGAGCGCCTGTGCTTGCTCACTGTAGAAA	1595	0.11579762785473822	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	1558	0.11311141329008285	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACA	30	2.165816E-6	45.000004	40
ACGTTAG	55	1.8189894E-12	45.000004	1
CGCGACT	30	2.165816E-6	45.000004	35
TCGTCCG	30	2.165816E-6	45.000004	1
CCGGTGC	30	2.165816E-6	45.000004	14
TTCGCTA	30	2.165816E-6	45.000004	9
CGATCTC	30	2.165816E-6	45.000004	11
AGCGTAC	40	6.8175723E-9	45.0	6
AACCGAT	20	7.033775E-4	45.0	28
TCGTTAA	20	7.033775E-4	45.0	30
GTCGCAC	25	3.8912098E-5	45.0	26
TACCCGT	25	3.8912098E-5	45.0	36
CGTATGA	20	7.033775E-4	45.0	34
TCCGATA	25	3.8912098E-5	45.0	18
GCGAAAA	20	7.033775E-4	45.0	44
ACTTCGA	25	3.8912098E-5	45.0	43
TGACGAT	25	3.8912098E-5	45.0	29
CGTTCGA	45	3.8562575E-10	45.0	31
TCGATAG	85	0.0	45.0	1
CGTTCAC	20	7.033775E-4	45.0	41