FastQCFastQC Report
Sat 14 Jan 2017
SRR2935042.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935042.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2437449
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC64250.2635952588136203No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG57240.23483568271582297No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC48050.19713232974310438No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT35140.14416711898382284No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC24890.10211495707192232No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGTAA351.2126839E-745.00000436
ACGTTAC207.034844E-445.030
ACCGCGT551.8189894E-1245.035
CATTACG207.034844E-445.026
CGTTACA207.034844E-445.031
ACTCGAT253.8920974E-545.029
CGCGTAC207.034844E-445.028
TAATCCG302.1665073E-644.9999961
TATAGCG1600.043.593751
CGTAAGG4150.043.3734932
TAGCACG800.042.18751
GCGTAAG2250.042.01
TCGATAG603.6379788E-1241.2499961
CGCGTAA603.6379788E-1241.24999631
TCGACTA556.184564E-1140.9090921
CGAATAT1700.039.70588314
ATTTTCG403.4603545E-739.37537
TCTATCG403.4603545E-739.37543
CCTTACG356.25117E-638.5714315
CGCATAC356.25117E-638.5714313