Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935042.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2437449 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC | 6425 | 0.2635952588136203 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 5724 | 0.23483568271582297 | No Hit |
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC | 4805 | 0.19713232974310438 | No Hit |
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT | 3514 | 0.14416711898382284 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC | 2489 | 0.10211495707192232 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGTAA | 35 | 1.2126839E-7 | 45.000004 | 36 |
ACGTTAC | 20 | 7.034844E-4 | 45.0 | 30 |
ACCGCGT | 55 | 1.8189894E-12 | 45.0 | 35 |
CATTACG | 20 | 7.034844E-4 | 45.0 | 26 |
CGTTACA | 20 | 7.034844E-4 | 45.0 | 31 |
ACTCGAT | 25 | 3.8920974E-5 | 45.0 | 29 |
CGCGTAC | 20 | 7.034844E-4 | 45.0 | 28 |
TAATCCG | 30 | 2.1665073E-6 | 44.999996 | 1 |
TATAGCG | 160 | 0.0 | 43.59375 | 1 |
CGTAAGG | 415 | 0.0 | 43.373493 | 2 |
TAGCACG | 80 | 0.0 | 42.1875 | 1 |
GCGTAAG | 225 | 0.0 | 42.0 | 1 |
TCGATAG | 60 | 3.6379788E-12 | 41.249996 | 1 |
CGCGTAA | 60 | 3.6379788E-12 | 41.249996 | 31 |
TCGACTA | 55 | 6.184564E-11 | 40.909092 | 1 |
CGAATAT | 170 | 0.0 | 39.705883 | 14 |
ATTTTCG | 40 | 3.4603545E-7 | 39.375 | 37 |
TCTATCG | 40 | 3.4603545E-7 | 39.375 | 43 |
CCTTACG | 35 | 6.25117E-6 | 38.57143 | 15 |
CGCATAC | 35 | 6.25117E-6 | 38.57143 | 13 |