SRR2935042.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935042.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2437449
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	6425	0.2635952588136203	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	5724	0.23483568271582297	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	4805	0.19713232974310438	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	3514	0.14416711898382284	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2489	0.10211495707192232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAA	35	1.2126839E-7	45.000004	36
ACGTTAC	20	7.034844E-4	45.0	30
ACCGCGT	55	1.8189894E-12	45.0	35
CATTACG	20	7.034844E-4	45.0	26
CGTTACA	20	7.034844E-4	45.0	31
ACTCGAT	25	3.8920974E-5	45.0	29
CGCGTAC	20	7.034844E-4	45.0	28
TAATCCG	30	2.1665073E-6	44.999996	1
TATAGCG	160	0.0	43.59375	1
CGTAAGG	415	0.0	43.373493	2
TAGCACG	80	0.0	42.1875	1
GCGTAAG	225	0.0	42.0	1
TCGATAG	60	3.6379788E-12	41.249996	1
CGCGTAA	60	3.6379788E-12	41.249996	31
TCGACTA	55	6.184564E-11	40.909092	1
CGAATAT	170	0.0	39.705883	14
ATTTTCG	40	3.4603545E-7	39.375	37
TCTATCG	40	3.4603545E-7	39.375	43
CCTTACG	35	6.25117E-6	38.57143	15
CGCATAC	35	6.25117E-6	38.57143	13