SRR2935041.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935041.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1581850
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC	17873	1.129879571387932	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC	16172	1.022347251635743	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG	14828	0.9373834434364826	No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	8929	0.5644656572999969	No Hit
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	4522	0.2858678130037614	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	3680	0.23263899864083196	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGTACGTT	3528	0.22302999652305844	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCT	3390	0.21430603407402724	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTC	2590	0.16373233871732465	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTA	2537	0.1603818313999431	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2492	0.15753706103612858	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT	2333	0.14748553908398393	No Hit
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	2317	0.14647406517684988	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC	1745	0.11031387299680753	No Hit
ACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1697	0.10727945127540538	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1589	0.10045200240225052	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.034092E-4	45.000004	28
GTCGATC	20	7.034092E-4	45.000004	23
CACGGTA	20	7.034092E-4	45.000004	36
CGGTTAC	20	7.034092E-4	45.000004	45
GCTATCG	20	7.034092E-4	45.000004	14
CGACATA	20	7.034092E-4	45.000004	11
CGTACTT	20	7.034092E-4	45.000004	39
CGTACCC	20	7.034092E-4	45.000004	28
TACTACG	20	7.034092E-4	45.000004	17
CGTATTA	45	3.8562575E-10	45.0	18
CCGGATA	25	3.8914743E-5	45.0	27
CGTAGTA	25	3.8914743E-5	45.0	34
TCGTCGG	25	3.8914743E-5	45.0	1
CGTACTA	25	3.8914743E-5	45.0	42
CTCGAAT	45	3.8562575E-10	45.0	43
TTACGCG	35	1.21232E-7	45.0	1
CGGTCTA	35	1.21232E-7	45.0	31
TCGACGA	25	3.8914743E-5	45.0	39
TGTAACG	35	1.21232E-7	45.0	1
TCGAACG	25	3.8914743E-5	45.0	1