##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935039.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2153253 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26551872910429 33.0 31.0 34.0 30.0 34.0 2 32.430933568883916 34.0 31.0 34.0 30.0 34.0 3 32.44583427957606 34.0 31.0 34.0 30.0 34.0 4 35.97255547768887 37.0 35.0 37.0 35.0 37.0 5 35.89599410752011 37.0 35.0 37.0 35.0 37.0 6 35.82784512549152 37.0 35.0 37.0 35.0 37.0 7 36.11989951947124 37.0 35.0 37.0 35.0 37.0 8 35.81013285480155 37.0 35.0 37.0 35.0 37.0 9 37.55594303131123 39.0 38.0 39.0 35.0 39.0 10 37.34666061071319 39.0 37.0 39.0 34.0 39.0 11 37.383868964770976 39.0 37.0 39.0 35.0 39.0 12 37.307706990307224 39.0 37.0 39.0 34.0 39.0 13 37.25157889017222 39.0 37.0 39.0 34.0 39.0 14 38.42321640791862 40.0 38.0 41.0 34.0 41.0 15 38.44694608575955 40.0 38.0 41.0 34.0 41.0 16 38.53221660436558 40.0 38.0 41.0 34.0 41.0 17 38.51558873945607 40.0 38.0 41.0 34.0 41.0 18 38.52577054345216 40.0 38.0 41.0 34.0 41.0 19 38.49350726551873 40.0 38.0 41.0 34.0 41.0 20 38.4240486371086 40.0 38.0 41.0 34.0 41.0 21 38.41368710504525 40.0 38.0 41.0 34.0 41.0 22 38.349809334992216 40.0 37.0 41.0 34.0 41.0 23 38.10506847082066 40.0 37.0 41.0 34.0 41.0 24 37.90756590145236 40.0 37.0 41.0 33.0 41.0 25 37.89661270644927 40.0 37.0 41.0 33.0 41.0 26 38.072080707654884 40.0 37.0 41.0 34.0 41.0 27 38.079534081689424 40.0 37.0 41.0 34.0 41.0 28 38.05144634652779 40.0 37.0 41.0 34.0 41.0 29 38.07894566964495 40.0 37.0 41.0 34.0 41.0 30 37.93767012051069 40.0 37.0 41.0 33.0 41.0 31 37.89392189399016 40.0 37.0 41.0 33.0 41.0 32 37.80954815806596 40.0 37.0 41.0 33.0 41.0 33 37.70253472304462 40.0 37.0 41.0 33.0 41.0 34 37.600103192704246 40.0 36.0 41.0 33.0 41.0 35 37.54401271007169 40.0 36.0 41.0 33.0 41.0 36 37.50038244460823 40.0 36.0 41.0 33.0 41.0 37 37.41289435101216 40.0 36.0 41.0 33.0 41.0 38 37.37823051912618 40.0 36.0 41.0 33.0 41.0 39 37.30452715031629 40.0 36.0 41.0 32.0 41.0 40 37.231722421842676 40.0 36.0 41.0 32.0 41.0 41 37.18649364473195 40.0 35.0 41.0 32.0 41.0 42 37.23995229543393 40.0 36.0 41.0 32.0 41.0 43 37.164971789195235 39.0 35.0 41.0 32.0 41.0 44 37.04792887784204 39.0 35.0 41.0 32.0 41.0 45 37.02448713643961 39.0 35.0 41.0 32.0 41.0 46 36.87086608029804 39.0 35.0 41.0 31.0 41.0 47 36.76094123635263 39.0 35.0 41.0 31.0 41.0 48 36.74157193790047 39.0 35.0 41.0 31.0 41.0 49 36.69787015274099 39.0 35.0 41.0 31.0 41.0 50 36.6004821542104 39.0 35.0 41.0 31.0 41.0 51 35.550119749049465 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 1.0 8 10.0 9 28.0 10 36.0 11 42.0 12 20.0 13 31.0 14 34.0 15 62.0 16 99.0 17 178.0 18 426.0 19 804.0 20 1569.0 21 2830.0 22 4266.0 23 5829.0 24 7643.0 25 9533.0 26 11708.0 27 13725.0 28 16470.0 29 20441.0 30 26398.0 31 34847.0 32 46526.0 33 64442.0 34 111398.0 35 159605.0 36 155412.0 37 245750.0 38 469510.0 39 742929.0 40 650.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.402910387214135 20.566603181326116 24.39945514995219 10.63103128150756 2 28.573929770444995 27.645752728546064 25.892591348996145 17.887726152012792 3 30.24191769383347 28.267695435696595 25.532392152710344 15.957994717759593 4 27.54181696252136 25.78679792852953 28.495258104830228 18.176127004118882 5 26.945556328030197 29.78089430271315 24.36564583910948 18.907903530147177 6 25.947995892726027 35.61694793876985 23.469188246806112 14.96586792169801 7 79.61906938014252 5.289345933803412 10.334735398023364 4.756849288030715 8 79.41008325542795 6.15236574615245 8.215244562529344 6.222306435890255 9 73.25089062920149 7.442460314695951 9.998546385399209 9.30810267070335 10 33.97766077650884 34.555948604274555 16.83903377819513 14.627356841021468 11 29.006020193632608 25.397805088394165 25.309659385125666 20.286515332847557 12 25.8975141332672 22.420774521154737 29.889613528925768 21.79209781665229 13 24.4922914306865 23.791073320227582 32.89729539445666 18.819339854629252 14 20.500517124555266 29.050418134794192 28.79067160245452 21.658393138196022 15 17.935328547086662 25.78066766887124 34.83645442500254 21.447549359039556 16 20.932143134132403 26.693008206652912 28.986932794242016 23.387915864972673 17 20.89094964688311 25.423394278331436 28.602444766128272 25.083211308657184 18 21.38225280540652 24.98387323737619 30.932825822139804 22.701048135077485 19 21.548977291567688 27.00249343667465 27.81688914400677 23.6316401277509 20 22.498424476826457 27.43402656352969 29.335382326182756 20.732166633461095 21 22.924477523077876 28.102178424922663 28.361739191818145 20.611604860181316 22 20.545193713883133 24.67503818640912 28.689057904482198 26.090710195225547 23 18.97008851259002 27.90782132893812 28.783055219242698 24.33903493922916 24 21.344867509763134 25.130535055564767 28.552752509807256 24.971844924864843 25 19.335349817230025 29.129507772658393 26.602401111248884 24.932741298862698 26 20.328358999151515 27.103642721036497 28.116528805486396 24.45146947432559 27 22.200781793871876 27.460405256604776 27.26112537634918 23.07768757317417 28 19.697081578430403 26.38096870177355 29.583146987372128 24.33880273242392 29 22.3594719245718 24.59302274279892 27.630101989872998 25.417403342756284 30 22.32482666923023 29.175298954651403 26.545417561243383 21.95445681487498 31 24.869441723754708 28.25613153679572 22.87334558456438 24.00108115488519 32 23.509360024112354 28.03455980323724 24.42183988597717 24.034240286673235 33 21.236752021244136 29.059706407003727 24.49948984164889 25.204051730103245 34 22.741730767355254 27.353311478028825 26.74748392316184 23.157473831454084 35 21.12598937514542 26.889687370689835 26.50064808919342 25.483675164971327 36 23.786661390928053 28.42638556639652 25.32865390179417 22.458299140881262 37 21.054191030965708 28.440364416071866 27.371284284754278 23.13416026820815 38 20.584018691718995 28.298114527182825 25.61812290520436 25.49974387589382 39 20.927452556666587 27.276636790939108 26.12674869139855 25.66916196099576 40 21.103836845925677 27.226155031480275 28.89061341142913 22.779394711164922 41 20.014879812079677 27.392740193558307 26.341632868966165 26.250747125395858 42 21.376261869831367 24.31892582989551 29.48306585431438 24.82174644595874 43 22.67889560585774 24.45244474290759 26.635885332564264 26.232774318670405 44 21.842161603861694 25.018332727273574 27.203677412733203 25.935828256131536 45 21.70427720291113 24.25330418673514 26.658595158116583 27.38382345223715 46 24.18122719438914 26.0987445506868 26.789931327159415 22.930096927764644 47 19.441468327223973 25.63470247109838 31.15890236771991 23.764926833957738 48 20.509155217710134 24.86424029131737 28.544950361151244 26.081654129821253 49 21.353459161556955 21.929796452158666 31.624523453583947 25.09222093270043 50 21.00282688564697 22.791469465037316 29.663862072873 26.541841576442714 51 19.961425805513798 22.91974050425101 27.24654278898021 29.872290901254985 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1235.0 1 1628.0 2 2021.0 3 3066.0 4 4111.0 5 3146.0 6 2181.0 7 2417.5 8 2654.0 9 2674.0 10 2694.0 11 2834.0 12 2974.0 13 3180.5 14 3387.0 15 3653.5 16 3920.0 17 3910.5 18 3901.0 19 4311.5 20 4722.0 21 5291.0 22 5860.0 23 6197.5 24 6535.0 25 7907.0 26 11841.0 27 14403.0 28 18167.5 29 21932.0 30 25464.0 31 28996.0 32 34167.0 33 39338.0 34 46835.0 35 54332.0 36 57990.5 37 61649.0 38 65655.0 39 69661.0 40 79146.5 41 88632.0 42 102776.0 43 116920.0 44 136757.0 45 156594.0 46 208445.5 47 260297.0 48 261433.0 49 262569.0 50 253589.0 51 244609.0 52 208239.5 53 171870.0 54 149336.5 55 126803.0 56 112182.0 57 97561.0 58 87211.0 59 76861.0 60 70446.5 61 64032.0 62 57034.0 63 50036.0 64 42238.0 65 34440.0 66 27700.0 67 20960.0 68 17405.5 69 13851.0 70 11110.0 71 8369.0 72 6902.5 73 5436.0 74 4735.5 75 2898.0 76 1761.0 77 1536.0 78 1311.0 79 790.0 80 269.0 81 188.0 82 107.0 83 75.0 84 43.0 85 30.5 86 18.0 87 45.5 88 73.0 89 40.5 90 8.0 91 4.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2153253.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.588457372501985 #Duplication Level Percentage of deduplicated Percentage of total 1 66.09270910221632 13.607469239841546 2 12.764883030121737 5.256185002612707 3 5.915885932414046 3.653968960202722 4 3.268816632193682 2.6919956756178047 5 2.1056375218758703 2.1675914180541036 6 1.3833671438592772 1.7088837283119929 7 1.011391552514911 1.4576094306103295 8 0.7601055393854752 1.2519520396992385 9 0.5770223234241233 1.0691999557919654 >10 3.9263399261694296 17.267863887069108 >50 1.3472073841064482 20.269386750573588 >100 0.832017093117354 23.42298050008213 >500 0.008221960463261797 1.1363221229133311 >1k 0.0050245313942155435 1.8840583804059983 >5k 4.567755812923221E-4 0.6765456717899946 >10k+ 9.135511625846442E-4 2.4779872364234725 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC 15607 0.724810321871141 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTC 13214 0.6136761448840429 RNA PCR Primer, Index 4 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG 12980 0.6028088663988858 No Hit GCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 10898 0.5061179526976162 RNA PCR Primer, Index 48 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 8578 0.3983739950669986 RNA PCR Primer, Index 4 (96% over 26bp) CTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGCT 5810 0.26982430768702054 TruSeq Adapter, Index 4 (96% over 27bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCAATCT 3437 0.159618957920876 No Hit TCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 3221 0.1495876239345771 RNA PCR Primer, Index 48 (96% over 25bp) GAATGACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCT 3034 0.14090308941866098 TruSeq Adapter, Index 4 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 2290 0.10635071679918709 TruSeq Adapter, Index 4 (96% over 26bp) GAATGATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTC 2273 0.10556121366137652 No Hit GAACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCT 2159 0.10026689850194102 TruSeq Adapter, Index 4 (95% over 24bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTA 2156 0.10012757441879797 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3932408314303987E-4 0.0 0.0 0.28528928091589795 0.0 2 1.3932408314303987E-4 0.0 0.0 1.5144527837648432 0.0 3 1.3932408314303987E-4 0.0 0.0 2.0817804503233015 0.0 4 1.3932408314303987E-4 0.0 0.0 2.8801074467329197 0.0 5 1.3932408314303987E-4 0.0 0.0 5.295383310739611 0.0 6 1.3932408314303987E-4 0.0 0.0 6.319879735451431 0.0 7 1.3932408314303987E-4 0.0 0.0 7.516812933733286 0.0 8 1.3932408314303987E-4 0.0 0.0 9.317669591079172 0.0 9 1.3932408314303987E-4 0.0 0.0 9.958188842648774 0.0 10 1.3932408314303987E-4 0.0 0.0 12.071224328957165 0.0 11 1.857654441907198E-4 0.0 0.0 13.989995602003109 0.0 12 2.3220680523839977E-4 0.0 0.0 16.374155754107854 0.0 13 2.3220680523839977E-4 0.0 0.0 17.00724438790983 0.0 14 2.3220680523839977E-4 0.0 0.0 17.274189331211893 0.0 15 2.3220680523839977E-4 0.0 0.0 17.84291023860178 0.0 16 2.3220680523839977E-4 0.0 0.0 18.815485221662293 0.0 17 2.3220680523839977E-4 0.0 0.0 19.984878692842877 0.0 18 2.3220680523839977E-4 0.0 0.0 21.295175253442117 0.0 19 2.3220680523839977E-4 0.0 0.0 22.198784815346826 0.0 20 2.3220680523839977E-4 0.0 0.0 22.98118242491709 0.0 21 2.3220680523839977E-4 0.0 0.0 23.84434156134927 0.0 22 2.3220680523839977E-4 0.0 0.0 24.784825563925835 0.0 23 2.3220680523839977E-4 0.0 0.0 25.67877532273263 0.0 24 2.3220680523839977E-4 0.0 0.0 26.39016409126099 0.0 25 2.3220680523839977E-4 0.0 0.0 27.031287080524212 0.0 26 2.3220680523839977E-4 0.0 0.0 27.613708189423164 0.0 27 2.3220680523839977E-4 0.0 0.0 28.193203492576117 0.0 28 2.3220680523839977E-4 0.0 0.0 28.788117327596897 0.0 29 2.3220680523839977E-4 0.0 0.0 29.399935818039033 0.0 30 2.3220680523839977E-4 0.0 0.0 30.13900363775181 0.0 31 2.3220680523839977E-4 0.0 0.0 30.783331080927322 0.0 32 2.3220680523839977E-4 0.0 0.0 31.37127871179095 0.0 33 2.7864816628607973E-4 0.0 0.0 31.936470075741216 0.0 34 2.7864816628607973E-4 0.0 0.0 32.520795280443124 0.0 35 2.7864816628607973E-4 0.0 0.0 33.11120430344228 0.0 36 2.7864816628607973E-4 0.0 0.0 33.686752090906175 0.0 37 2.7864816628607973E-4 0.0 0.0 34.221849452897544 0.0 38 3.2508952733375964E-4 0.0 0.0 34.78982729851067 0.0 39 3.715308883814396E-4 0.0 0.0 35.355483076071415 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCAT 25 3.8919447E-5 45.000004 40 TCCGCGA 25 3.8919447E-5 45.000004 14 TAGCGAT 25 3.8919447E-5 45.000004 31 CGCTATA 25 3.8919447E-5 45.000004 21 ATCGTCC 20 7.0346624E-4 45.0 20 TACGCGC 20 7.0346624E-4 45.0 25 GTTAGCG 165 0.0 42.272728 1 AACGTAG 80 0.0 42.1875 1 GACCCGT 65 0.0 41.53846 20 TCGCAAG 60 3.6379788E-12 41.249996 1 AGTCGAA 95 0.0 40.263157 39 TAGGACG 175 0.0 39.857143 1 GACGTAT 85 0.0 39.705883 9 CGACGGT 290 0.0 39.568966 28 TCACGAC 325 0.0 38.76923 25 CACGCGA 35 6.2508334E-6 38.571426 11 CGCGATA 35 6.2508334E-6 38.571426 22 GATATCG 35 6.2508334E-6 38.571426 1 ATCCGGC 320 0.0 37.96875 6 GTCGAAA 30 1.1402531E-4 37.499996 40 >>END_MODULE