SRR2935036.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935036.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1712852
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	8720	0.5090924376420146	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	7836	0.4574826079544526	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	5747	0.3355222751294332	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	3887	0.2269314570085448	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	2828	0.16510474927197447	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	2570	0.1500421519197222	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG	2058	0.12015048585633785	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG	1955	0.11413712334749294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	30	2.1661272E-6	45.000004	37
TCGTTAA	20	7.0342555E-4	45.000004	27
GATCGGT	20	7.0342555E-4	45.000004	25
ACGTTCA	20	7.0342555E-4	45.000004	11
TTTCGTA	20	7.0342555E-4	45.000004	12
CGCATGA	20	7.0342555E-4	45.000004	43
GAATCGT	20	7.0342555E-4	45.000004	8
TATATCG	30	2.1661272E-6	45.000004	40
ATATCGC	30	2.1661272E-6	45.000004	41
CCGTAGA	20	7.0342555E-4	45.000004	21
AACGCTC	20	7.0342555E-4	45.000004	22
ACTAACG	20	7.0342555E-4	45.000004	40
CGTACCA	20	7.0342555E-4	45.000004	22
ACGTCGA	20	7.0342555E-4	45.000004	29
CGTCGGT	20	7.0342555E-4	45.000004	25
TCGAGTA	30	2.1661272E-6	45.000004	38
ACGTAAT	20	7.0342555E-4	45.000004	42
CGACTAA	20	7.0342555E-4	45.000004	29
TCGAACG	30	2.1661272E-6	45.000004	1
AATCGTC	20	7.0342555E-4	45.000004	36