SRR2935030.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935030.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1574566
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	8080	0.5131572763542462	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	7804	0.49562863671640306	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	5706	0.36238557164323376	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	2971	0.18868691436243384	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	2393	0.15197838642521178	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC	2168	0.13768873454653535	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC	2153	0.13673609108795695	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG	2026	0.12867037647199292	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCC	1658	0.10529885695486883	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG	1588	0.10085318748150283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTT	30	2.1660162E-6	45.000004	13
ACCGCGT	30	2.1660162E-6	45.000004	4
ACGGGTA	260	0.0	45.000004	5
CGCTATA	30	2.1660162E-6	45.000004	6
CTCGCTA	30	2.1660162E-6	45.000004	37
TTACGTA	30	2.1660162E-6	45.000004	43
GCGTAGT	30	2.1660162E-6	45.000004	10
ACGACTT	30	2.1660162E-6	45.000004	34
TACGTAA	30	2.1660162E-6	45.000004	44
TCAAACG	30	2.1660162E-6	45.000004	1
ACTATCC	25	3.891465E-5	45.0	26
AATCCCG	20	7.034082E-4	45.0	42
TCGCACA	20	7.034082E-4	45.0	19
CGTATCG	20	7.034082E-4	45.0	30
CGTATAG	25	3.891465E-5	45.0	2
ATAGCCG	45	3.8562575E-10	45.0	1
ATTCGTC	40	6.8175723E-9	45.0	25
TAAGTCG	25	3.891465E-5	45.0	18
CGTTAGT	25	3.891465E-5	45.0	15
CCCGTTA	25	3.891465E-5	45.0	33