SRR2935029.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935029.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5196853
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20927	0.4026860101680767	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTT	9043	0.17400915515601462	No Hit
CCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	8842	0.1701414298230102	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTG	8540	0.16433022061620753	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	8071	0.15530552817253057	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTC	7204	0.138622354721213	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGCT	6762	0.1301172074715217	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCT	6195	0.11920675839782269	No Hit
GCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	6113	0.11762888040127362	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	12050	41.95643	1
CGACGGT	320	40.781254	28
CGGTCTA	345	35.869564	31
ATAGCGG	1000	35.775	2
ACAACGA	1305	35.0	13
CACAACG	1305	34.827587	12
CCATACG	690	34.56522	2
CGTAAGG	510	33.97059	2
TACGGGT	465	33.870964	4
TACGGGA	1700	33.75	4
ACGTAGG	735	33.67347	2
GTTAACG	215	33.488373	1
AACCCGC	645	33.48837	21
AGCGACT	1315	33.365017	19
TATTACG	135	33.333336	1
CTAACGG	250	33.300003	2
AGGTACG	390	32.884617	1
TAAGACG	330	32.727272	1
CGTTAGG	635	32.598427	2
AGGGTAC	1095	32.46575	6