SRR2935027.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935027.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620485
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	5425	0.8743160592117457	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	4316	0.6955849053562939	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	3190	0.5141139592415611	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1945	0.3134644673118609	No Hit
ACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1389	0.22385714400831608	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	1032	0.1663215065634141	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	1028	0.16567684956123033	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	956	0.15407302352192237	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	903	0.14553131824298735	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCC	819	0.13199352119712807	No Hit
ACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	786	0.1266751009291119	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	762	0.12280715891600925	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	733	0.11813339565017687	No Hit
AAAACTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	686	0.11055867587451752	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	667	0.10749655511414459	No Hit
GGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	649	0.10459559860431758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.0307753E-4	45.0	13
ATTTACC	20	7.0307753E-4	45.0	34
CGTGGTT	20	7.0307753E-4	45.0	18
AACGTAG	20	7.0307753E-4	45.0	1
AGCCGTA	20	7.0307753E-4	45.0	13
GGAATCG	20	7.0307753E-4	45.0	8
ACTATCG	25	3.888723E-5	45.0	1
AATCCCG	25	3.888723E-5	45.0	10
GTCGCGA	40	6.8066583E-9	45.0	16
TACCCGT	25	3.888723E-5	45.0	41
CAAACGA	20	7.0307753E-4	45.0	6
TACCCAC	25	3.888723E-5	45.0	31
ATCTACG	35	1.2107193E-7	45.0	2
GGTCGAT	25	3.888723E-5	45.0	16
TTTACGT	25	3.888723E-5	45.0	15
CGCGGAA	20	7.0307753E-4	45.0	25
CGTGCCG	20	7.0307753E-4	45.0	36
CGTGCAT	25	3.888723E-5	45.0	39
CCCTAGT	35	1.2107193E-7	45.0	12
ACGCACT	20	7.0307753E-4	45.0	31