SRR2935026.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935026.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1778075
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	7205	0.40521350336740575	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC	7057	0.39688989497068455	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG	6192	0.3482417783276859	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	6171	0.3470607257849078	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	4886	0.27479155828634905	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	3590	0.2019037442177636	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	2277	0.12805983999550075	No Hit
ACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1831	0.10297653361078694	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	30	2.1661745E-6	45.000004	2
TATTACG	30	2.1661745E-6	45.000004	1
CTTCGTA	20	7.0343295E-4	45.0	10
CACGATT	25	3.8916696E-5	45.0	16
CGTTACG	20	7.0343295E-4	45.0	43
ACGATTG	95	0.0	45.0	1
CACTCGA	20	7.0343295E-4	45.0	32
CCGTAAA	20	7.0343295E-4	45.0	25
TTAAGCG	50	2.1827873E-11	45.0	1
ACGGATA	25	3.8916696E-5	45.0	20
AACGCAT	25	3.8916696E-5	45.0	45
GTATACG	40	6.8193913E-9	45.0	1
GCTCGAA	25	3.8916696E-5	45.0	24
ATCGCGT	20	7.0343295E-4	45.0	24
TACCGTT	20	7.0343295E-4	45.0	29
TCTAGCG	90	0.0	42.5	1
AACACGT	225	0.0	42.0	41
CGGTACG	65	0.0	41.538464	2
TATACGG	65	0.0	41.538464	2
ACGTTAG	60	3.6379788E-12	41.250004	1