##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935021.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1369652 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20978394511891 33.0 31.0 34.0 30.0 34.0 2 32.38247525648851 34.0 31.0 34.0 30.0 34.0 3 32.386482113704794 34.0 31.0 34.0 30.0 34.0 4 35.94407119472684 37.0 35.0 37.0 35.0 37.0 5 35.86512413372156 37.0 35.0 37.0 35.0 37.0 6 35.80212929999737 37.0 35.0 37.0 35.0 37.0 7 36.081544071048704 37.0 35.0 37.0 35.0 37.0 8 35.760369787362045 37.0 35.0 37.0 35.0 37.0 9 37.50756104470332 39.0 37.0 39.0 35.0 39.0 10 37.39689278736497 39.0 37.0 39.0 34.0 39.0 11 37.3506978414955 39.0 37.0 39.0 35.0 39.0 12 37.17183488944637 39.0 37.0 39.0 34.0 39.0 13 37.013817378428975 39.0 37.0 39.0 33.0 39.0 14 38.084602512170974 40.0 37.0 41.0 33.0 41.0 15 38.17478819437346 40.0 37.0 41.0 33.0 41.0 16 38.27875401926913 40.0 37.0 41.0 34.0 41.0 17 38.280328871859425 40.0 37.0 41.0 34.0 41.0 18 38.27297882965892 40.0 37.0 41.0 34.0 41.0 19 38.24995911370188 40.0 37.0 41.0 34.0 41.0 20 38.19894980622815 40.0 37.0 41.0 34.0 41.0 21 38.16090437571003 40.0 36.0 41.0 34.0 41.0 22 38.07403340410557 40.0 36.0 41.0 34.0 41.0 23 37.86254829693966 40.0 36.0 41.0 33.0 41.0 24 37.65075800276274 39.0 35.0 41.0 33.0 41.0 25 37.59689176520751 39.0 35.0 41.0 33.0 41.0 26 37.78706196902571 39.0 36.0 41.0 34.0 41.0 27 37.83317076162412 40.0 36.0 41.0 34.0 41.0 28 37.80129186099827 40.0 36.0 41.0 34.0 41.0 29 37.86902585474267 40.0 36.0 41.0 34.0 41.0 30 37.781428421234004 40.0 36.0 41.0 34.0 41.0 31 37.624160005607266 40.0 36.0 41.0 33.0 41.0 32 37.538690849938526 40.0 35.0 41.0 33.0 41.0 33 37.491755570028005 40.0 35.0 41.0 33.0 41.0 34 37.34840382812568 40.0 35.0 41.0 33.0 41.0 35 37.28345375321614 39.0 35.0 41.0 33.0 41.0 36 37.24704231439811 39.0 35.0 41.0 33.0 41.0 37 37.146571537879694 39.0 35.0 41.0 32.0 41.0 38 37.04537137900722 39.0 35.0 41.0 32.0 41.0 39 37.051351730220524 39.0 35.0 41.0 32.0 41.0 40 36.94803570542006 39.0 35.0 41.0 32.0 41.0 41 36.8745126499286 39.0 35.0 41.0 32.0 41.0 42 36.87760686656173 39.0 35.0 41.0 32.0 41.0 43 36.81761717574975 39.0 35.0 41.0 32.0 41.0 44 36.689061893094014 39.0 35.0 41.0 31.0 41.0 45 36.68202944981645 39.0 35.0 41.0 31.0 41.0 46 36.530951657793366 39.0 35.0 41.0 31.0 41.0 47 36.443811274688755 39.0 35.0 40.0 31.0 41.0 48 36.41111318787546 39.0 35.0 40.0 31.0 41.0 49 36.38548770052539 39.0 35.0 40.0 31.0 41.0 50 36.311732469269565 38.0 35.0 40.0 31.0 41.0 51 35.23364621086232 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 11.0 10 19.0 11 14.0 12 18.0 13 21.0 14 33.0 15 40.0 16 82.0 17 161.0 18 302.0 19 580.0 20 1030.0 21 1592.0 22 2627.0 23 3741.0 24 5071.0 25 6510.0 26 7913.0 27 9569.0 28 11182.0 29 13839.0 30 17363.0 31 23219.0 32 31167.0 33 45794.0 34 90092.0 35 125568.0 36 99886.0 37 160399.0 38 294672.0 39 416804.0 40 328.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.19823721646082 22.116201779722147 24.699047641298666 10.986513362518362 2 31.43871581978488 25.709377272475052 25.264811791608377 17.58709511613169 3 30.997727890004178 25.428210961616525 26.39028015875565 17.183780989623642 4 28.632893610931827 26.7470861211461 26.460443966788645 18.159576301133427 5 25.719379813266436 30.167151948086087 23.821744501523014 20.291723737124467 6 26.61186929234579 33.30364209302801 23.796555621427924 16.28793299319827 7 76.78724230680494 6.9968137891960875 10.48317382809648 5.732770075902492 8 75.13404864885386 6.721926445549673 10.243988984063106 7.9000359215333535 9 68.68642545697739 8.509752842327831 12.971397114011443 9.832424586683333 10 39.01852441350066 26.133937671758957 19.57504533998417 15.272492574756216 11 32.00886064489374 23.749682401077063 23.867230508187482 20.374226445841717 12 28.889966210395052 21.0109575278976 30.386404721783343 19.71267153992401 13 24.4061265197291 26.247397149056837 29.93103357641211 19.41544275480195 14 17.50291314874143 30.74379477414701 28.775484575644033 22.977807501467527 15 16.329038325063593 26.352971411716258 36.93259309664061 20.385397166579537 16 18.437238072152635 26.16905608139878 32.57725320008294 22.816452646365644 17 17.707490661861552 26.033036128885296 28.540534383916498 27.718938825336654 18 19.313227009488543 26.645308443312608 31.490553804908107 22.550910742290743 19 21.48969227219761 27.604895258065554 27.349720951015293 23.555691518721545 20 23.0595070864716 28.550609935954537 28.622891070140444 19.76699190743342 21 22.089479663447356 28.08611238475175 28.96078711964791 20.863620832152986 22 18.865010966289248 26.993426067351418 27.02109732983269 27.120465636526653 23 19.131502016570632 27.383233113228762 28.739344008551075 24.74592086164953 24 22.35494855627561 23.926442629222606 29.025913151661882 24.692695662839903 25 18.78827614605754 28.53038582063181 27.12667159249211 25.554666440818547 26 18.435631824726283 28.293172280258048 29.319126318218057 23.952069576797612 27 20.730229284518987 28.318580194093094 29.405936690487806 21.545253830900112 28 15.889145563982677 28.32756057743135 31.019266207766645 24.76402765081933 29 18.87822600193334 25.37870933638618 30.25885407388154 25.484210587798945 30 22.452710615543218 25.714707093480683 29.767634406403964 22.06494788457214 31 22.58800045559018 29.74660716736806 24.1752649578141 23.490127419227658 32 21.873366373356152 29.19836571625493 25.151790381790413 23.776477528598505 33 24.025080823450043 26.598508234208396 24.396196990184368 24.98021395215719 34 21.296577524801922 26.359542423914977 27.63745827407254 24.70642177721056 35 19.94572343923858 25.42981720904288 27.87627806187265 26.748181289845892 36 22.30617704351178 27.4534699325084 27.090238980412547 23.15011404356727 37 20.786520955688015 28.109329961187225 29.04774351441096 22.056405568713807 38 20.106932271847157 29.288242560884083 23.87387453163285 26.730950635635914 39 25.030737734840674 23.09126697876541 26.400866789520254 25.477128496873657 40 25.413973768519305 22.79586347480966 29.33862032107426 22.45154243559678 41 19.8098495092184 26.232356832246438 27.29160399867996 26.666189659855206 42 20.477829404841522 24.955755184528623 29.12287208721632 25.443543323413536 43 22.57544252116596 22.79637455353623 29.007076250025555 25.62110667527226 44 21.25583724916986 23.77333804499245 27.763621708287943 27.20720299754974 45 22.511557680345078 22.383349931223407 26.790381790410994 28.314710598020522 46 24.47234772044286 24.234550090095876 27.584598131496175 23.708504057965087 47 19.3315528323983 24.178696486406768 32.01579671332572 24.47395396786921 48 19.863147719274675 22.637721114560485 29.841959855496142 27.657171310668694 49 20.962478060120382 20.614871514808144 32.35303566161332 26.069614763458166 50 20.51740150052714 21.212103512425053 30.56681551226151 27.7036794747863 51 19.516125263935656 21.287086062737103 27.18734393846028 32.00944473486696 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1530.0 1 1815.5 2 2101.0 3 2674.5 4 3248.0 5 2566.0 6 1884.0 7 1968.0 8 2052.0 9 2184.5 10 2317.0 11 2485.0 12 2653.0 13 2868.0 14 3083.0 15 3062.0 16 3041.0 17 3193.5 18 3346.0 19 3489.5 20 3633.0 21 3849.0 22 4065.0 23 4959.0 24 5853.0 25 6888.0 26 9468.5 27 11014.0 28 13412.0 29 15810.0 30 17558.5 31 19307.0 32 21583.5 33 23860.0 34 25570.0 35 27280.0 36 30400.5 37 33521.0 38 37675.5 39 41830.0 40 48230.0 41 54630.0 42 63109.5 43 71589.0 44 86735.0 45 101881.0 46 126265.0 47 150649.0 48 165449.0 49 180249.0 50 174982.0 51 169715.0 52 138068.5 53 106422.0 54 88895.0 55 71368.0 56 61786.0 57 52204.0 58 49310.5 59 46417.0 60 44754.0 61 43091.0 62 38590.0 63 34089.0 64 29047.0 65 24005.0 66 19765.5 67 15526.0 68 12621.0 69 9716.0 70 8499.5 71 7283.0 72 5946.5 73 4610.0 74 3888.5 75 2374.5 76 1582.0 77 1399.5 78 1217.0 79 741.0 80 265.0 81 299.0 82 333.0 83 232.5 84 132.0 85 110.5 86 89.0 87 75.5 88 62.0 89 33.5 90 5.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1369652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.808748105475544 #Duplication Level Percentage of deduplicated Percentage of total 1 63.00584708442636 12.480669540675125 2 12.491786159482823 4.94893290841322 3 6.216513495565589 3.6942404978384413 4 3.8497238162669105 3.05032837408325 5 2.5220192136100863 2.4979021659785863 6 1.8386400812747852 2.1852694935961985 7 1.326348899550282 1.8391317875816358 8 0.9953986404860713 1.5774080747137118 9 0.7883794044178818 1.405512813029279 >10 4.876787064854953 18.75054512713595 >50 1.2565571006481164 18.28815663886705 >100 0.8070688356412319 22.472565751526318 >500 0.01562788893355885 2.0876737993107004 >1k 0.008186037060435587 2.970018914815163 >5k 7.441851873123261E-4 0.9965907866290066 >10k+ 3.7209259365616305E-4 0.7550533258063414 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 10244 0.7479272107075374 TruSeq Adapter, Index 21 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 7933 0.5791982196937616 TruSeq Adapter, Index 21 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGCT 5588 0.4079868462938031 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGC 4269 0.3116850119592422 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCG 3779 0.27590950109954937 No Hit TCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 3646 0.2661990052947756 TruSeq Adapter, Index 21 (95% over 23bp) GAATCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTC 3528 0.25758367818978833 No Hit ACTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 2697 0.19691133222161541 No Hit GCCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 1682 0.12280491686939457 TruSeq Adapter, Index 21 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 1592 0.11623390467067546 No Hit GGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 1584 0.11564981469745599 TruSeq Adapter, Index 21 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 1553 0.11338646605123053 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCC 1521 0.11105010615835263 No Hit ACCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 1511 0.1103199936918283 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1903373995730302E-4 0.0 0.0 0.432518625169021 0.0 2 2.1903373995730302E-4 0.0 0.0 2.3352647241781126 0.0 3 2.1903373995730302E-4 0.0 0.0 3.2495115547598954 0.0 4 2.1903373995730302E-4 0.0 0.0 4.356289042764147 0.0 5 2.1903373995730302E-4 0.0 0.0 7.485039995560916 0.0 6 2.1903373995730302E-4 0.0 0.0 8.938985961397494 0.0 7 2.1903373995730302E-4 0.0 0.0 10.575752088851766 0.0 8 2.1903373995730302E-4 0.0 0.0 12.864873705145541 0.0 9 2.1903373995730302E-4 0.0 0.0 13.650839775358996 0.0 10 2.1903373995730302E-4 0.0 0.0 15.76480741093358 0.0 11 2.1903373995730302E-4 0.0 0.0 18.48513344995663 0.0 12 2.1903373995730302E-4 0.0 0.0 20.898739241792807 0.0 13 2.1903373995730302E-4 0.0 0.0 21.70149789873632 0.0 14 2.1903373995730302E-4 0.0 0.0 22.036108442144428 0.0 15 2.1903373995730302E-4 0.0 0.0 22.720734902004306 0.0 16 2.1903373995730302E-4 0.0 0.0 24.02048111491094 0.0 17 2.1903373995730302E-4 0.0 0.0 25.540648281461277 0.0 18 2.1903373995730302E-4 0.0 0.0 27.193549894425736 0.0 19 2.1903373995730302E-4 0.0 0.0 28.194242041044003 0.0 20 2.1903373995730302E-4 0.0 0.0 29.1419280225926 0.0 21 2.1903373995730302E-4 0.0 0.0 30.200518087806245 0.0 22 2.1903373995730302E-4 0.0 0.0 31.331462298452454 0.0 23 2.1903373995730302E-4 0.0 0.0 32.39012537491275 0.0 24 2.1903373995730302E-4 0.0 0.0 33.242385657086615 0.0 25 2.1903373995730302E-4 0.0 0.0 33.99367138514017 0.0 26 3.650562332621717E-4 0.0 0.0 34.642595345387 0.0 27 3.650562332621717E-4 0.0 0.0 35.29889344154574 0.0 28 4.3806747991460604E-4 0.0 0.0 35.9307327700759 0.0 29 4.3806747991460604E-4 0.0 0.0 36.58929421488086 0.0 30 4.3806747991460604E-4 0.0 0.0 37.389716511931496 0.0 31 4.3806747991460604E-4 0.0 0.0 38.087923063668725 0.0 32 5.110787265670404E-4 0.0 0.0 38.7845233679796 0.0 33 5.110787265670404E-4 0.0 0.0 39.42819051846747 0.0 34 5.110787265670404E-4 0.0 0.0 40.04557362016045 0.0 35 5.110787265670404E-4 0.0 0.0 40.706982503584854 0.0 36 5.110787265670404E-4 0.0 0.0 41.38927260355185 0.0 37 5.110787265670404E-4 0.0 0.0 42.04133604740474 0.0 38 5.110787265670404E-4 0.0 0.0 42.63951719122814 0.0 39 5.110787265670404E-4 0.0 0.0 43.26938521609869 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGACAA 35 1.2121563E-7 45.000004 36 GTATTCG 35 1.2121563E-7 45.000004 32 GTCGAAC 45 3.8562575E-10 45.000004 6 ACGTTTA 45 3.8562575E-10 45.000004 11 ACGTTCA 35 1.2121563E-7 45.000004 21 TAGGTCG 45 3.8562575E-10 45.000004 1 ACGGGTA 45 3.8562575E-10 45.000004 5 CCCGTGA 35 1.2121563E-7 45.000004 33 TCATGCG 35 1.2121563E-7 45.000004 1 ATCCACG 35 1.2121563E-7 45.000004 1 CGCACCC 45 3.8562575E-10 45.000004 31 TGTCGAA 45 3.8562575E-10 45.000004 5 GCACTAG 35 1.2121563E-7 45.000004 1 AACGTGC 40 6.8175723E-9 45.0 15 GGTACGC 55 1.8189894E-12 45.0 8 TCGCACC 25 3.891199E-5 45.0 1 CGAACGG 40 6.8175723E-9 45.0 2 TCACCGT 25 3.891199E-5 45.0 28 CAACGAA 20 7.0337614E-4 45.0 25 CGCGGAT 20 7.0337614E-4 45.0 37 >>END_MODULE