##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935012.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 686103 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.094366297771614 33.0 31.0 34.0 30.0 34.0 2 32.27046813670834 34.0 31.0 34.0 30.0 34.0 3 32.27426057020593 34.0 31.0 34.0 30.0 34.0 4 35.85738147187813 37.0 35.0 37.0 35.0 37.0 5 35.76557309908279 37.0 35.0 37.0 35.0 37.0 6 35.701974776381974 37.0 35.0 37.0 33.0 37.0 7 35.998992862587684 37.0 35.0 37.0 35.0 37.0 8 35.7538547419265 37.0 35.0 37.0 35.0 37.0 9 37.46699985279178 39.0 37.0 39.0 35.0 39.0 10 37.30164712878387 39.0 37.0 39.0 34.0 39.0 11 37.214598974206496 39.0 37.0 39.0 34.0 39.0 12 36.95909214797195 39.0 35.0 39.0 33.0 39.0 13 36.726844220182684 39.0 35.0 39.0 33.0 39.0 14 37.747673454277276 40.0 36.0 41.0 33.0 41.0 15 37.89676185645595 40.0 36.0 41.0 33.0 41.0 16 38.00805272677717 40.0 36.0 41.0 34.0 41.0 17 38.05182020775306 40.0 36.0 41.0 34.0 41.0 18 38.051461661004254 40.0 36.0 41.0 34.0 41.0 19 38.01489572265389 40.0 36.0 41.0 34.0 41.0 20 37.96518307018042 40.0 36.0 41.0 34.0 41.0 21 37.858815658873375 40.0 35.0 41.0 34.0 41.0 22 37.74834828006873 39.0 35.0 41.0 33.0 41.0 23 37.537757450411966 39.0 35.0 41.0 33.0 41.0 24 37.291996974215245 39.0 35.0 41.0 33.0 41.0 25 37.252427113713246 39.0 35.0 41.0 33.0 41.0 26 37.45105764003364 39.0 35.0 41.0 33.0 41.0 27 37.505139898819856 39.0 35.0 41.0 33.0 41.0 28 37.508476132592335 39.0 35.0 41.0 33.0 41.0 29 37.60129018529288 39.0 35.0 41.0 33.0 41.0 30 37.48686567468733 39.0 35.0 41.0 33.0 41.0 31 37.362694814043955 39.0 35.0 41.0 33.0 41.0 32 37.29102918949487 39.0 35.0 41.0 33.0 41.0 33 37.20677507604543 39.0 35.0 41.0 33.0 41.0 34 37.142914402064996 39.0 35.0 41.0 33.0 41.0 35 37.09036398325033 39.0 35.0 41.0 33.0 41.0 36 37.00139774931752 39.0 35.0 41.0 32.0 41.0 37 36.89634355191568 39.0 35.0 41.0 32.0 41.0 38 36.81596932239037 39.0 35.0 41.0 32.0 41.0 39 36.7605009743435 39.0 35.0 41.0 31.0 41.0 40 36.707822294903245 39.0 35.0 41.0 31.0 41.0 41 36.66058886202217 39.0 35.0 41.0 31.0 41.0 42 36.64326930504603 39.0 35.0 41.0 31.0 41.0 43 36.53029647152104 39.0 35.0 41.0 31.0 41.0 44 36.35677004764591 39.0 35.0 40.0 31.0 41.0 45 36.34043722298256 39.0 35.0 40.0 31.0 41.0 46 36.18357010536319 38.0 35.0 40.0 31.0 41.0 47 36.12576974594194 38.0 35.0 40.0 31.0 41.0 48 36.10599574699425 38.0 35.0 40.0 31.0 41.0 49 36.074736592027726 38.0 35.0 40.0 31.0 41.0 50 35.97479532956422 38.0 35.0 40.0 30.0 41.0 51 34.845979393764495 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 10.0 10 11.0 11 8.0 12 14.0 13 13.0 14 19.0 15 36.0 16 47.0 17 97.0 18 202.0 19 330.0 20 618.0 21 1047.0 22 1630.0 23 2453.0 24 3256.0 25 4032.0 26 4425.0 27 5254.0 28 6272.0 29 7754.0 30 9745.0 31 12729.0 32 16879.0 33 24405.0 34 49365.0 35 72865.0 36 50339.0 37 77202.0 38 145786.0 39 189118.0 40 136.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.74125896549061 21.905457343868196 26.19898178553366 11.154301905107541 2 31.40534292956014 25.25728644241462 24.911565756161977 18.425804871863264 3 29.80179360824832 25.00236844905211 27.44150659594842 17.754331346751144 4 27.528082518222487 28.094907032909056 25.66859494857186 18.708415500296603 5 22.50988554196673 30.217620386443432 26.20218830117344 21.070305770416393 6 25.182662078434287 33.84710458925264 25.01694352014202 15.95328981217106 7 75.85275097179286 7.220635968651937 10.45601024918999 6.470602810365207 8 75.20765832535348 5.395254065351704 10.52669934397605 8.870388265318764 9 68.9908075026636 8.305167008452084 13.990173487071184 8.713852001813137 10 41.05112497686208 22.647911465188173 20.387317939143248 15.913645618806505 11 32.11427438737333 23.73696077702619 23.651113608306627 20.49765122729386 12 28.55956029925536 21.11636299506051 30.594823226250284 19.729253479433844 13 22.22377689647181 29.424299267019677 29.75486187933882 18.597061957169696 14 16.44155469368302 32.497307255616136 29.694375334315694 21.36676271638515 15 14.080393177117722 26.882844121072203 40.130126234690714 18.906636467119366 16 15.875896184683642 25.142726383647933 35.421649519095524 23.559727912572896 17 15.961889104114105 25.974525690749058 27.92583620826611 30.137748996870734 18 18.47958688418503 25.987643254729974 32.24530427647161 23.28746558461339 19 21.693098558088217 27.572536485046705 27.222006025334387 23.512358931530688 20 23.358737682243046 27.166766505903635 28.098988052814228 21.375507759039095 21 20.744261430135126 29.155826457543547 28.41847361110504 21.68143850121629 22 17.21228445291742 27.79334881205883 26.654015504960626 28.340351230063128 23 17.021788273772305 29.34340762247068 26.946245680313307 26.68855842344371 24 21.667446432969978 23.6229837211031 30.283936959902526 24.425632886024403 25 16.602317727804717 28.14796029167632 27.8943540547119 27.355367925807055 26 16.68029435813573 29.82525947270308 27.86899343101546 25.625452738145732 27 19.002977687023666 29.173462293562334 29.006431978871976 22.817128040542016 28 15.38763130317168 27.646286344761645 31.551968144724622 25.41411420734205 29 16.015088113592274 24.943630912559776 31.463643213919777 27.577637759928177 30 19.317070469011213 28.297500521058794 28.1995560433346 24.185872966595394 31 20.410055050043507 30.090088514406727 23.921043924891745 25.57881251065802 32 22.414710327749624 28.235702219637577 24.771499322987946 24.578088129624852 33 19.9936452690048 28.429987917266065 26.22740317415898 25.348963639570155 34 17.387622558129028 26.479551904014414 27.23833010495509 28.894495432901472 35 18.693694678495795 24.404353282233135 27.76973719689318 29.132214842377895 36 20.893364407384894 25.818135177954332 27.007023726758227 26.281476687902543 37 18.717889296505046 27.002651205431256 30.045926049004308 24.233533449059397 38 19.305556162850184 29.12755081962912 26.047546796909504 25.51934622061119 39 19.545899085122787 25.56831845947329 28.432028427218654 26.453754028185273 40 23.622400718259502 22.367924349551018 28.015764396890848 25.993910535298635 41 19.476084494602123 22.52620962158743 25.71348616752878 32.28421971628166 42 21.23514982444327 22.56148129362501 27.654011132439297 28.549357749492422 43 22.34518723865076 22.286303951447522 29.486826321995384 25.881682487906332 44 19.182105310718654 25.42854352772106 27.922192440493625 27.467158721066664 45 18.954151198872474 24.56599082062023 27.489167078412425 28.990690902094872 46 23.158767706889492 24.194180757116644 28.040687768454593 24.60636376753928 47 17.932001463337137 22.773694328694088 31.382605818659883 27.911698389308892 48 19.79906806995451 20.665264544827817 30.765497308713126 28.77017007650455 49 20.236757454784485 19.39431834578773 32.99344267551665 27.375481523911134 50 18.92733306806704 21.094791889847443 31.44731913429908 28.530555907786443 51 18.233413933476463 21.28179005193098 26.909079249034036 33.575716765558525 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1125.0 1 1125.5 2 1126.0 3 1329.5 4 1533.0 5 1257.5 6 982.0 7 1061.5 8 1141.0 9 1284.0 10 1427.0 11 1500.0 12 1573.0 13 1661.5 14 1750.0 15 1850.5 16 1951.0 17 2051.5 18 2152.0 19 2166.0 20 2180.0 21 2087.0 22 1994.0 23 2088.5 24 2183.0 25 2574.0 26 3013.0 27 3061.0 28 3689.5 29 4318.0 30 5141.0 31 5964.0 32 7684.5 33 9405.0 34 10141.0 35 10877.0 36 13496.5 37 16116.0 38 17639.5 39 19163.0 40 24099.5 41 29036.0 42 35941.0 43 42846.0 44 51002.0 45 59158.0 46 68833.0 47 78508.0 48 90478.5 49 102449.0 50 97006.0 51 91563.0 52 74567.0 53 57571.0 54 46588.0 55 35605.0 56 29553.5 57 23502.0 58 20927.5 59 18353.0 60 17423.0 61 16493.0 62 15393.0 63 14293.0 64 11138.0 65 7983.0 66 6535.0 67 5087.0 68 4359.5 69 3632.0 70 3139.5 71 2647.0 72 2344.0 73 2041.0 74 1589.0 75 844.0 76 551.0 77 400.5 78 250.0 79 296.0 80 342.0 81 191.5 82 41.0 83 24.0 84 7.0 85 4.5 86 2.0 87 3.0 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 7.0 96 14.0 97 7.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 686103.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.34338259806495 #Duplication Level Percentage of deduplicated Percentage of total 1 65.53733666413625 15.29863124209122 2 12.479297501878875 5.8261803228286935 3 5.935181539268493 4.156416403803495 4 3.5465656334100197 3.311553539593546 5 2.336434162521493 2.7270138285464336 6 1.6077986431269362 2.2518875320297056 7 1.1409207542348168 1.8643064776123313 8 0.866252675007079 1.6177014095429967 9 0.6580475029983506 1.382494916717261 >10 4.1639140322967565 19.467678092839943 >50 1.1780090866174349 20.087893553681738 >100 0.5357451704787692 17.36803652316588 >500 0.011345191845432761 1.993767316916607 >1k 0.0025211537434295024 1.7720414408489125 >5k 6.302884358573756E-4 0.874397399781226 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC 5943 0.8661964748733061 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC 4642 0.6765747999935869 TruSeq Adapter, Index 13 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGCT 3448 0.5025484511800706 Illumina Single End Adapter 2 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC 2260 0.3293966066319488 TruSeq Adapter, Index 13 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC 1694 0.24690170426306257 Illumina Single End Adapter 2 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 983 0.14327294881380784 No Hit AAAACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC 972 0.14166969099391782 No Hit CGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG 923 0.1345279061598623 No Hit AGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG 922 0.1343821554489632 No Hit ACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG 912 0.13292464833997228 No Hit GGCCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCT 905 0.13190439336367862 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCC 874 0.12738612132580676 No Hit GGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG 871 0.1269488691931095 TruSeq Adapter, Index 13 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG 820 0.11951558293725578 TruSeq Adapter, Index 13 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC 744 0.10843852890892475 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 713 0.10392025687105289 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.457507108990924E-4 0.0 0.0 0.5299495848291 0.0 2 1.457507108990924E-4 0.0 0.0 2.758623705187122 0.0 3 1.457507108990924E-4 0.0 0.0 3.7833969535186407 0.0 4 1.457507108990924E-4 0.0 0.0 5.0600274302837915 0.0 5 1.457507108990924E-4 0.0 0.0 8.29919122930522 0.0 6 2.915014217981848E-4 0.0 0.0 10.126030639714445 0.0 7 2.915014217981848E-4 0.0 0.0 12.09410248898489 0.0 8 2.915014217981848E-4 0.0 0.0 15.051092911705677 0.0 9 2.915014217981848E-4 0.0 0.0 16.106619560036904 0.0 10 2.915014217981848E-4 0.0 0.0 18.346662235845056 0.0 11 2.915014217981848E-4 0.0 0.0 21.538894305956976 0.0 12 2.915014217981848E-4 0.0 0.0 23.89466304621901 0.0 13 2.915014217981848E-4 0.0 0.0 24.832714621565568 0.0 14 2.915014217981848E-4 0.0 0.0 25.181350322036195 0.0 15 2.915014217981848E-4 0.0 0.0 25.812013648096567 0.0 16 2.915014217981848E-4 0.0 0.0 27.20232967936301 0.0 17 2.915014217981848E-4 0.0 0.0 28.795676450911888 0.0 18 2.915014217981848E-4 0.0 0.0 30.75165099117771 0.0 19 2.915014217981848E-4 0.0 0.0 31.72949251059972 0.0 20 2.915014217981848E-4 0.0 0.0 32.66011079969043 0.0 21 2.915014217981848E-4 0.0 0.0 33.77831025370826 0.0 22 2.915014217981848E-4 0.0 0.0 34.92493109635142 0.0 23 2.915014217981848E-4 0.0 0.0 36.05960038070086 0.0 24 2.915014217981848E-4 0.0 0.0 36.839220933300105 0.0 25 2.915014217981848E-4 0.0 0.0 37.574387519075124 0.0 26 2.915014217981848E-4 0.0 0.0 38.236241497267905 0.0 27 4.372521326972772E-4 0.0 0.0 38.82478286787844 0.0 28 4.372521326972772E-4 0.0 0.0 39.43445809156934 0.0 29 4.372521326972772E-4 0.0 0.0 40.10214209819809 0.0 30 4.372521326972772E-4 0.0 0.0 40.88190840150823 0.0 31 4.372521326972772E-4 0.0 0.0 41.568102748421154 0.0 32 4.372521326972772E-4 0.0 0.0 42.16947018159081 0.0 33 4.372521326972772E-4 0.0 0.0 42.7813316659452 0.0 34 4.372521326972772E-4 0.0 0.0 43.38692586973093 0.0 35 4.372521326972772E-4 0.0 0.0 44.052132114274386 0.0 36 4.372521326972772E-4 0.0 0.0 44.59942603370048 0.0 37 4.372521326972772E-4 0.0 0.0 45.16901981189413 0.0 38 4.372521326972772E-4 0.0 0.0 45.727390785348554 0.0 39 4.372521326972772E-4 0.0 0.0 46.31039362894492 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCATC 35 1.210974E-7 45.000004 16 ACAACAG 25 3.889155E-5 45.000004 1 TTAGGTA 25 3.889155E-5 45.000004 18 ACTATCG 25 3.889155E-5 45.000004 19 CCTTAGA 25 3.889155E-5 45.000004 29 GTACATC 25 3.889155E-5 45.000004 44 ATTAGGA 25 3.889155E-5 45.000004 17 TGCTTAG 70 0.0 45.000004 21 ATAATCG 25 3.889155E-5 45.000004 40 CAGTTAT 25 3.889155E-5 45.000004 27 ATCAGCC 25 3.889155E-5 45.000004 39 ATTACCC 25 3.889155E-5 45.000004 16 TTCACGG 25 3.889155E-5 45.000004 2 TCGATTA 25 3.889155E-5 45.000004 41 CGACAAT 35 1.210974E-7 45.000004 20 ACGGGTA 35 1.210974E-7 45.000004 5 TCGATAC 25 3.889155E-5 45.000004 1 CCATGCG 25 3.889155E-5 45.000004 24 CACCTAA 25 3.889155E-5 45.000004 14 ATTCCGT 25 3.889155E-5 45.000004 14 >>END_MODULE