##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935010.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 992237 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.28117173618803 33.0 31.0 34.0 30.0 34.0 2 32.4502291287263 34.0 31.0 34.0 31.0 34.0 3 32.459773219503 34.0 31.0 34.0 30.0 34.0 4 35.98699403469131 37.0 35.0 37.0 35.0 37.0 5 35.905117426582564 37.0 35.0 37.0 35.0 37.0 6 35.844913060085446 37.0 35.0 37.0 35.0 37.0 7 36.09573116100287 37.0 35.0 37.0 35.0 37.0 8 35.855025563449054 37.0 35.0 37.0 35.0 37.0 9 37.59997762631307 39.0 38.0 39.0 35.0 39.0 10 37.44995802414141 39.0 37.0 39.0 35.0 39.0 11 37.345893168668375 39.0 37.0 39.0 35.0 39.0 12 37.15538626356405 39.0 37.0 39.0 34.0 39.0 13 37.0409942382717 39.0 37.0 39.0 33.0 39.0 14 38.15085307240105 40.0 37.0 41.0 33.0 41.0 15 38.25684488685667 40.0 37.0 41.0 34.0 41.0 16 38.32428845124703 40.0 37.0 41.0 34.0 41.0 17 38.3512920804203 40.0 37.0 41.0 34.0 41.0 18 38.348346211640965 40.0 37.0 41.0 34.0 41.0 19 38.270037299556456 40.0 36.0 41.0 34.0 41.0 20 38.2320231960711 40.0 36.0 41.0 34.0 41.0 21 38.15362156420291 40.0 36.0 41.0 34.0 41.0 22 38.08968220294143 40.0 36.0 41.0 34.0 41.0 23 37.89383282421438 40.0 36.0 41.0 34.0 41.0 24 37.71236105890024 39.0 35.0 41.0 33.0 41.0 25 37.6413175481261 39.0 35.0 41.0 33.0 41.0 26 37.80952232178401 40.0 35.0 41.0 34.0 41.0 27 37.82847847842804 40.0 36.0 41.0 34.0 41.0 28 37.82994788543463 40.0 36.0 41.0 34.0 41.0 29 37.83350953451645 40.0 36.0 41.0 34.0 41.0 30 37.71084428417807 40.0 36.0 41.0 34.0 41.0 31 37.53296944177651 40.0 35.0 41.0 33.0 41.0 32 37.42743921059182 40.0 35.0 41.0 33.0 41.0 33 37.33498650020106 39.0 35.0 41.0 33.0 41.0 34 37.18868576761399 39.0 35.0 41.0 33.0 41.0 35 37.0840514917303 39.0 35.0 41.0 32.0 41.0 36 37.00167500304867 39.0 35.0 41.0 32.0 41.0 37 36.85661288583272 39.0 35.0 41.0 32.0 41.0 38 36.829151704683454 39.0 35.0 41.0 32.0 41.0 39 36.77336765309094 39.0 35.0 41.0 31.0 41.0 40 36.643691980847315 39.0 35.0 41.0 31.0 41.0 41 36.6024911387098 39.0 35.0 41.0 31.0 41.0 42 36.619457851299636 39.0 35.0 41.0 31.0 41.0 43 36.56544152253947 39.0 35.0 41.0 31.0 41.0 44 36.440127711423784 39.0 35.0 41.0 31.0 41.0 45 36.376505814639046 39.0 35.0 41.0 31.0 41.0 46 36.22567491436018 38.0 35.0 40.0 31.0 41.0 47 36.120805815546085 38.0 35.0 40.0 31.0 41.0 48 36.101505991008196 38.0 35.0 40.0 31.0 41.0 49 36.0663903885866 38.0 35.0 40.0 31.0 41.0 50 35.9666450656446 38.0 35.0 40.0 31.0 41.0 51 34.909637516036994 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 20.0 10 19.0 11 26.0 12 22.0 13 14.0 14 33.0 15 36.0 16 78.0 17 149.0 18 254.0 19 527.0 20 848.0 21 1479.0 22 2196.0 23 3340.0 24 4719.0 25 5629.0 26 6418.0 27 7216.0 28 8282.0 29 10066.0 30 12438.0 31 16237.0 32 21817.0 33 31860.0 34 64005.0 35 100996.0 36 72396.0 37 115129.0 38 211539.0 39 294162.0 40 283.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.954530016518234 22.716246219401214 24.906549544110934 11.422674219969624 2 30.14350402172062 25.040287753833006 26.926833004614824 17.889375219831553 3 30.69730316446575 25.536237814151256 26.951020774270663 16.815438247112333 4 29.08538988165126 26.059197550585196 26.238187046038398 18.617225521725153 5 23.977739189326744 30.58462847081897 24.575681011693778 20.86195132816051 6 26.01475252384259 32.91874824260736 25.37468366932497 15.69181556422508 7 77.81114794146963 7.367393072421207 8.745995160430422 6.075463825678744 8 78.47389283003959 5.170034981561865 8.969631247373359 7.386440941025178 9 72.86132244614946 7.427660931813669 11.904514747988635 7.806501874048237 10 42.714996517969 21.76687626040956 18.36406019932738 17.15406702229407 11 29.772927234118463 24.649252144396954 24.234734241920027 21.34308637956456 12 26.15050638103598 21.45223369013653 31.735059265074778 20.66220066375271 13 22.35191793896015 27.478918847009332 32.00545837335233 18.163704840678186 14 16.661745127424194 30.608614675727676 30.92204785751791 21.80759233933022 15 14.595101775079947 25.74808236338697 39.25926971076466 20.397546150768413 16 16.82702822007242 24.219919233005825 34.761755508008676 24.19129703891308 17 17.456011013497783 24.676463385259773 28.994282615947604 28.873242985294844 18 18.820503569207762 25.153063229853352 31.796838860070732 24.22959434086816 19 20.929979430317555 27.458460025175434 28.081698223307537 23.52986232119947 20 24.30125060847358 25.94712755117981 28.071116074083108 21.6805057662635 21 21.155127252863984 28.425567681914703 28.70362625058328 21.715678814638036 22 19.482341416415636 25.37649775204916 26.86364245638895 28.27751837514626 23 18.443577492070947 26.905064011924573 27.70497371091786 26.94638478508663 24 21.154824905743286 23.767003246200254 30.347285981071053 24.730885866985407 25 18.65370874095604 27.758388368907834 27.800918530552682 25.78698435958345 26 18.461214407444995 29.131346643997354 28.52745866158992 23.87998028696773 27 20.3347587320368 29.2435174257763 27.64541132814035 22.77631251404654 28 18.74602539514249 25.604669045802563 30.681782678936585 24.96752288011836 29 18.50807821115318 24.864825641454612 30.861276086257618 25.765820061134587 30 22.638240662261133 27.381663856518152 26.719422879816012 23.260672601404707 31 23.618752374684675 29.096173595622822 23.736566969383322 23.54850706030918 32 22.52919413406273 28.743636852888976 23.401264012529268 25.32590500051903 33 23.978747013062403 27.44273797489914 23.45246145830079 25.126053553737666 34 21.751557339627528 26.59445273659418 26.237582351797002 25.416407571981292 35 20.43261841676938 27.291463632176587 25.375590710687064 26.900327240366966 36 24.134858909716126 27.764233746574657 25.19267070266479 22.90823664104443 37 21.642712376176256 29.27506230870246 26.647061135595628 22.435164179525657 38 21.941330549052292 28.614635414724503 23.442584785691324 26.001449250531877 39 23.381208320189632 24.51873897062899 26.155646282087847 25.944406427093526 40 22.683693512739396 26.14959933967389 27.761311057741246 23.40539608984547 41 18.572276583114718 28.24335315050739 25.86005158041879 27.3243186859591 42 20.910024520351488 26.147079780334735 27.15359334513831 25.789302354175465 43 23.5410491646653 24.069753496392497 27.27543923477959 25.113758104162613 44 22.230979090680954 24.07569965643289 27.108342059407175 26.584979193478976 45 21.817065882445423 24.978911288331314 25.711901491276784 27.49212133794648 46 24.20066979965472 25.832537992435274 26.799645649174543 23.167146558735464 47 19.9960291744815 26.180539528358647 29.484891210466852 24.338540086692998 48 20.457108533545917 23.90114458541659 28.68447759960574 26.957269281431756 49 21.777156062513292 21.213177900037994 31.463148421193726 25.546517616254988 50 20.35894650169264 22.378927615075835 30.347588328191755 26.914537555039775 51 19.377729312654136 22.956108268488272 27.367957453713178 30.298204965144414 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1269.0 1 1409.5 2 1550.0 3 1961.5 4 2373.0 5 1897.5 6 1422.0 7 1608.0 8 1794.0 9 2066.5 10 2339.0 11 2442.0 12 2545.0 13 2599.5 14 2654.0 15 2622.0 16 2590.0 17 2685.0 18 2780.0 19 2856.0 20 2932.0 21 3103.0 22 3274.0 23 2959.0 24 2644.0 25 3240.0 26 4558.5 27 5281.0 28 6534.5 29 7788.0 30 10265.5 31 12743.0 32 13068.0 33 13393.0 34 16975.0 35 20557.0 36 22844.5 37 25132.0 38 27085.0 39 29038.0 40 34161.5 41 39285.0 42 50555.0 43 61825.0 44 69116.0 45 76407.0 46 88954.5 47 101502.0 48 116723.0 49 131944.0 50 126813.0 51 121682.0 52 99368.0 53 77054.0 54 64163.5 55 51273.0 56 46169.0 57 41065.0 58 36709.0 59 32353.0 60 31279.0 61 30205.0 62 27126.5 63 24048.0 64 20300.5 65 16553.0 66 14042.0 67 11531.0 68 10899.5 69 10268.0 70 8428.5 71 6589.0 72 5487.5 73 4386.0 74 3528.5 75 2026.0 76 1381.0 77 1380.0 78 1379.0 79 994.5 80 610.0 81 373.5 82 137.0 83 126.0 84 115.0 85 67.5 86 20.0 87 17.0 88 14.0 89 9.0 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 992237.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.463442915338888 #Duplication Level Percentage of deduplicated Percentage of total 1 66.13466915858291 14.194776962100677 2 12.363685936933514 5.307345346611013 3 5.85420782688671 3.7695436652073906 4 3.515442681969036 3.01814013306353 5 2.2389932629076608 2.4028252043123466 6 1.5536798257448259 2.000839094915264 7 1.0792753299998963 1.621547510477042 8 0.8358082149310088 1.4351457527474403 9 0.6362433269967567 1.2290375096334163 >10 3.748365025876199 15.755881644970712 >50 1.0738634616276401 17.070567283996027 >100 0.9534390380514586 28.662743487497494 >500 0.008059902360454896 1.177575257527731 >1k 0.0033187833248931923 1.2758761302179997 >5k 9.482238071123406E-4 1.0781550167219418 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC 5545 0.5588382614234301 RNA PCR Primer, Index 33 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC 5050 0.5089509865082636 Illumina Paired End PCR Primer 2 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGCT 4170 0.42026249777019 TruSeq Adapter, Index 1 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC 2097 0.2113406373678869 RNA PCR Primer, Index 33 (95% over 24bp) ACTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC 1774 0.17878793070607124 RNA PCR Primer, Index 33 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTG 1207 0.12164432489415332 TruSeq Adapter, Index 1 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCC 1175 0.11841928894004154 No Hit GCCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTG 1106 0.11146530516398805 RNA PCR Primer, Index 33 (95% over 23bp) AAAACTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTC 1009 0.10168941492808674 No Hit ACCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTG 994 0.10017767932459685 RNA PCR Primer, Index 33 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0078237356599281E-4 0.0 0.0 0.44606278540308414 0.0 2 1.0078237356599281E-4 0.0 0.0 1.9954909966066574 0.0 3 1.0078237356599281E-4 0.0 0.0 2.7918733125251327 0.0 4 1.0078237356599281E-4 0.0 0.0 3.712721859797609 0.0 5 1.0078237356599281E-4 0.0 0.0 6.161028060836272 0.0 6 1.0078237356599281E-4 0.0 0.0 7.551220121805577 0.0 7 1.0078237356599281E-4 0.0 0.0 9.016998962949376 0.0 8 1.0078237356599281E-4 0.0 0.0 11.34255223298466 0.0 9 1.0078237356599281E-4 0.0 0.0 12.190938253663187 0.0 10 1.0078237356599281E-4 0.0 0.0 13.979623819712428 0.0 11 1.0078237356599281E-4 0.0 0.0 16.52296779902382 0.0 12 1.0078237356599281E-4 0.0 0.0 18.432592213352255 0.0 13 1.0078237356599281E-4 0.0 0.0 19.21940020378196 0.0 14 1.0078237356599281E-4 0.0 0.0 19.4877836645882 0.0 15 1.0078237356599281E-4 0.0 0.0 20.006409758958796 0.0 16 1.0078237356599281E-4 0.0 0.0 21.131947306943804 0.0 17 1.0078237356599281E-4 0.0 0.0 22.48918353175703 0.0 18 1.0078237356599281E-4 0.0 0.0 24.221330186235747 0.0 19 1.0078237356599281E-4 0.0 0.0 25.08392652158708 0.0 20 1.0078237356599281E-4 0.0 0.0 25.84574048337242 0.0 21 1.0078237356599281E-4 0.0 0.0 26.79722687220896 0.0 22 1.0078237356599281E-4 0.0 0.0 27.739743629798124 0.0 23 1.0078237356599281E-4 0.0 0.0 28.725092896152834 0.0 24 1.0078237356599281E-4 0.0 0.0 29.454152586529226 0.0 25 1.0078237356599281E-4 0.0 0.0 30.11730060459346 0.0 26 1.0078237356599281E-4 0.0 0.0 30.680774855200927 0.0 27 1.0078237356599281E-4 0.0 0.0 31.23971389899792 0.0 28 2.0156474713198562E-4 0.0 0.0 31.79704042481786 0.0 29 2.0156474713198562E-4 0.0 0.0 32.428139648088106 0.0 30 2.0156474713198562E-4 0.0 0.0 33.144500759395186 0.0 31 2.0156474713198562E-4 0.0 0.0 33.76894834601008 0.0 32 2.0156474713198562E-4 0.0 0.0 34.294629206530296 0.0 33 2.0156474713198562E-4 0.0 0.0 34.839458718028055 0.0 34 2.0156474713198562E-4 0.0 0.0 35.379047546100374 0.0 35 2.0156474713198562E-4 0.0 0.0 35.981625357651446 0.0 36 2.0156474713198562E-4 0.0 0.0 36.52786582237913 0.0 37 2.0156474713198562E-4 0.0 0.0 37.06201240227889 0.0 38 2.0156474713198562E-4 0.0 0.0 37.54546544827496 0.0 39 2.0156474713198562E-4 0.0 0.0 38.03768656077127 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 45 3.8380676E-10 45.000004 11 AACGTAT 30 2.1652013E-6 45.000004 2 ACACGCG 30 2.1652013E-6 45.000004 26 ATCTACG 45 3.8380676E-10 45.000004 1 CGACGGA 35 1.2117016E-7 45.000004 16 ATAATCG 35 1.2117016E-7 45.000004 44 CGTGAGT 30 2.1652013E-6 45.000004 32 CTATACG 30 2.1652013E-6 45.000004 1 TTGTCGC 30 2.1652013E-6 45.000004 38 ATTGTCG 30 2.1652013E-6 45.000004 36 CGCGAGT 30 2.1652013E-6 45.000004 20 TAACGCC 30 2.1652013E-6 45.000004 12 AGTTGCA 30 2.1652013E-6 45.000004 35 TCGTCGG 30 2.1652013E-6 45.000004 10 TATTATG 30 2.1652013E-6 45.000004 37 CTCGCAC 35 1.2117016E-7 45.000004 26 TCCAACG 30 2.1652013E-6 45.000004 28 CGTAAGA 30 2.1652013E-6 45.000004 29 CGTCGAC 30 2.1652013E-6 45.000004 17 GCGGATA 35 1.2117016E-7 45.000004 1 >>END_MODULE