SRR2934996.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934996.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	993975
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	10726	1.0791015870620488	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	10299	1.036142760129782	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	7791	0.7838225307477553	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	4412	0.4438743429160693	No Hit
ACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2690	0.27063054905807493	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	2035	0.20473351945471466	No Hit
GCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1775	0.17857591991750296	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCC	1750	0.176060766115848	No Hit
GGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1645	0.1654971201488971	No Hit
ACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1591	0.16006438793732236	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	1545	0.1554365049422772	No Hit
AGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1424	0.14326316054226715	No Hit
GGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	1342	0.13501345607283888	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1273	0.12807163158027113	No Hit
GGATGAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGT	1170	0.11770919791745266	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTAAG	25	3.8904232E-5	45.000004	38
TCGTTAT	25	3.8904232E-5	45.000004	38
CAAACGT	25	3.8904232E-5	45.000004	34
ACCGGCC	35	1.2117016E-7	45.000004	15
CGCGGTA	25	3.8904232E-5	45.000004	31
ACGTTCA	25	3.8904232E-5	45.000004	12
GCGAACG	35	1.2117016E-7	45.000004	1
GCACGTC	25	3.8904232E-5	45.000004	40
TTCGTCC	25	3.8904232E-5	45.000004	11
CAATTCG	25	3.8904232E-5	45.000004	1
ATATGCG	35	1.2117016E-7	45.000004	1
GCTTGCG	35	1.2117016E-7	45.000004	1
CGTTATG	25	3.8904232E-5	45.000004	39
ATTCCCG	35	1.2117016E-7	45.000004	1
AACGGAG	35	1.2117016E-7	45.000004	1
GCTTCCG	35	1.2117016E-7	45.000004	1
GTCGTTA	25	3.8904232E-5	45.000004	37
TCGTCCG	25	3.8904232E-5	45.000004	12
CGGCTAG	35	1.2117016E-7	45.000004	2
CCGAAAT	25	3.8904232E-5	45.000004	1