SRR2934992.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934992.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1967120
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	12822	0.6518158526170239	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	9731	0.4946825816421977	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	6819	0.3466489080483143	No Hit
TCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	5714	0.29047541583634956	No Hit
ACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	3734	0.18982065151083818	No Hit
AGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	2531	0.12866525682215627	No Hit
ACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	2477	0.12592012688600593	No Hit
GCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	2253	0.11453292122493798	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	2216	0.11265199886127944	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAG	35	1.2125201E-7	45.000004	2
ACACGTT	35	1.2125201E-7	45.000004	42
TCCGCTA	25	3.891821E-5	45.000004	45
TAACGCG	35	1.2125201E-7	45.000004	1
CGCTAAG	25	3.891821E-5	45.000004	2
TTGCGTA	25	3.891821E-5	45.000004	13
TTACGGA	50	2.1827873E-11	45.000004	36
ACCGTAC	25	3.891821E-5	45.000004	44
ACGAGTC	35	1.2125201E-7	45.000004	36
TCGCGTG	25	3.891821E-5	45.000004	1
GTACGTT	25	3.891821E-5	45.000004	29
TGCCCCG	40	6.8193913E-9	45.0	33
GTATTCG	20	7.0345134E-4	45.0	33
CGAGTTA	20	7.0345134E-4	45.0	38
TACTTCG	20	7.0345134E-4	45.0	31
CGACCGG	165	0.0	45.0	2
CCTACGC	20	7.0345134E-4	45.0	28
CAATTCG	20	7.0345134E-4	45.0	23
TCGATTA	20	7.0345134E-4	45.0	41
CGTTCCG	20	7.0345134E-4	45.0	19