SRR2934991.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934991.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	867656
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	6506	0.7498363406695742	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	6224	0.7173349806835889	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	4883	0.5627806411757654	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	2815	0.32443733461187385	No Hit
ACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	2184	0.251712660316992	No Hit
ACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	1541	0.17760494942696184	No Hit
GCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	1289	0.14856118092884738	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	1229	0.14164599795310584	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCC	1080	0.12447329356334769	No Hit
AGACATAGACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCC	1002	0.11548355569488368	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	949	0.10937514406631199	No Hit
AGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	931	0.10730058917358953	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	60	0.0	45.000004	25
TACTTAT	30	2.164883E-6	45.000004	36
GGCCGTA	30	2.164883E-6	45.000004	8
CTAACGA	30	2.164883E-6	45.000004	10
GGTATTC	30	2.164883E-6	45.000004	8
ACTCGGT	30	2.164883E-6	45.000004	28
TGCTCTA	45	3.8380676E-10	45.000004	23
CATCGTT	30	2.164883E-6	45.000004	36
ACGTAAC	30	2.164883E-6	45.000004	22
CGTCCAT	30	2.164883E-6	45.000004	35
CCACGTA	30	2.164883E-6	45.000004	20
CGTCATT	30	2.164883E-6	45.000004	6
CAATAGT	30	2.164883E-6	45.000004	25
AATACGG	75	0.0	45.000004	2
TGCGTAG	60	0.0	45.000004	1
GCATAAC	35	1.2114651E-7	45.0	42
AGCGTTA	25	3.890012E-5	45.0	1
AATCCGA	20	7.0323306E-4	45.0	25
GTACCGA	20	7.0323306E-4	45.0	24
TCTTGCG	25	3.890012E-5	45.0	36