SRR2934985.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934985.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1221913
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	7332	0.6000427198990436	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	6548	0.5358810324466635	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	4976	0.4072303019936771	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	3075	0.25165457769906696	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2328	0.19052092906778142	TruSeq Adapter, Index 16 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1498	0.1225946528107975	No Hit
AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1395	0.11416524744396696	No Hit
GGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1382	0.11310134191223106	No Hit
GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1335	0.10925491422057053	No Hit
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1302	0.1065542309477025	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC	1292	0.10573584207713642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCCG	30	2.1656142E-6	45.000004	37
GTATGCG	30	2.1656142E-6	45.000004	1
TATTCGA	30	2.1656142E-6	45.000004	24
CGGGTCG	35	1.2120108E-7	45.0	6
GTCGACT	25	3.8909508E-5	45.0	30
TAGAACG	35	1.2120108E-7	45.0	14
GACCGAA	25	3.8909508E-5	45.0	9
CGCCTAG	20	7.033462E-4	45.0	37
TACGCTA	20	7.033462E-4	45.0	17
ACTACGC	20	7.033462E-4	45.0	15
ACGTCAA	35	1.2120108E-7	45.0	36
CGTAAGT	20	7.033462E-4	45.0	14
ATGCGAT	20	7.033462E-4	45.0	42
ATACGAC	20	7.033462E-4	45.0	28
ATCGCTA	20	7.033462E-4	45.0	12
TCGAATC	25	3.8909508E-5	45.0	11
ATCGCAA	20	7.033462E-4	45.0	15
ACGACTC	20	7.033462E-4	45.0	12
TGGTACG	75	0.0	45.0	1
CGTAAGG	90	0.0	44.999996	2