SRR2934984.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934984.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1930497
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	11043	0.5720288609617109	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	9418	0.4878536459782118	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT	6642	0.34405647872024664	TruSeq Adapter, Index 15 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGC	6369	0.3299150426030188	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	5945	0.30795178650886273	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG	5197	0.26920528755030443	No Hit
TCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	3783	0.19595990048158585	TruSeq Adapter, Index 21 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	2441	0.12644412293829	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	30	2.1662709E-6	45.000004	42
CCGTACA	30	2.1662709E-6	45.000004	15
CGGAAAT	25	3.8917948E-5	45.0	32
ACGTTCA	20	7.03448E-4	45.0	15
CGGCATA	25	3.8917948E-5	45.0	6
CACGATA	25	3.8917948E-5	45.0	10
TACGACG	55	1.8189894E-12	45.0	1
GTCGTGC	55	1.8189894E-12	45.0	22
CGTGTCG	20	7.03448E-4	45.0	2
TCGAGTA	25	3.8917948E-5	45.0	21
ACCCGGT	25	3.8917948E-5	45.0	29
CGGTCAA	20	7.03448E-4	45.0	45
TACGTTG	20	7.03448E-4	45.0	1
TAATCGC	25	3.8917948E-5	45.0	30
CGTCATA	70	0.0	41.785713	38
TCGCGTC	65	0.0	41.538464	18
CGCGTCG	60	3.6379788E-12	41.250004	19
CGTAAGG	180	0.0	41.25	2
TCGATAG	115	0.0	41.08696	1
CCGCTCG	55	6.184564E-11	40.909092	19