SRR2934981.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934981.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	965107
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	9659	1.0008216705505193	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	7522	0.7793954452718713	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	5727	0.5934057052741302	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2921	0.3026607412442351	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2097	0.21728160711713831	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1800	0.1865078172679299	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	1702	0.17635350277223147	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC	1577	0.16340157101751412	No Hit
GCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1498	0.15521595014853273	No Hit
ACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1487	0.15407618015411761	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG	1442	0.1494134847224194	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC	1404	0.1454760974689853	No Hit
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1271	0.13169524208196606	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	1227	0.12713616210430553	No Hit
GGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1194	0.12371685212106015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	20	7.032723E-4	45.000004	20
TCGCCCA	20	7.032723E-4	45.000004	22
CGGGTTA	90	0.0	45.000004	6
TCGCATA	20	7.032723E-4	45.000004	35
TCCGCGA	20	7.032723E-4	45.000004	33
TCCGCAC	20	7.032723E-4	45.000004	23
CGTATCA	20	7.032723E-4	45.000004	30
CGAAACT	35	1.2116652E-7	45.000004	23
GGCACGC	20	7.032723E-4	45.000004	9
CGCATCG	20	7.032723E-4	45.000004	21
CGCATAT	20	7.032723E-4	45.000004	36
GGCCGTA	20	7.032723E-4	45.000004	33
CGGCACG	20	7.032723E-4	45.000004	31
GACCGAC	45	3.8380676E-10	45.000004	9
GTCTCGC	45	3.8380676E-10	45.000004	31
CGCGCAT	30	2.1651376E-6	45.000004	25
TTCGTGC	30	2.1651376E-6	45.000004	42
AAGCGTA	20	7.032723E-4	45.000004	31
CGCGATT	20	7.032723E-4	45.000004	21
TTCCGCG	40	6.8139343E-9	45.000004	1