SRR2934980.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934980.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	948214
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	7512	0.7922262274127992	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	3738	0.3942148080496597	No Hit
CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT	3300	0.3480227037356546	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1859	0.19605278977108542	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	1576	0.16620720639011868	No Hit
ACTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1474	0.15545014100192572	No Hit
ATTACGGGGGCAGTTACCAAACATTGTTATGCAAGAAATCATAAAATGAAG	1470	0.15502829530042797	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCC	1395	0.1471186883973449	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGC	1345	0.14184561712862287	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC	1276	0.13456877877778645	No Hit
ACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	1167	0.12307348341197241	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCG	1134	0.11959325637461585	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC	1023	0.10788703815805294	No Hit
AGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	1017	0.10725426960580628	No Hit
GGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	991	0.10451227254607083	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	980	0.10335219686695198	No Hit
GCCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	955	0.10071566123259096	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAT	25	3.890287E-5	45.0	38
AACCGTA	25	3.890287E-5	45.0	24
GGTAACG	25	3.890287E-5	45.0	29
CGACGGA	20	7.032662E-4	45.0	3
ACGTTAT	20	7.032662E-4	45.0	11
ACGTTAG	35	1.2116288E-7	45.0	1
TTAGCGA	25	3.890287E-5	45.0	21
TAGACCG	45	3.8380676E-10	45.0	1
TTCACGT	20	7.032662E-4	45.0	19
GGTCCAC	35	1.2116288E-7	45.0	35
GAATCGT	25	3.890287E-5	45.0	10
GAATCGG	20	7.032662E-4	45.0	33
GATTTCG	20	7.032662E-4	45.0	22
TACGGTC	20	7.032662E-4	45.0	14
ATCGTAG	25	3.890287E-5	45.0	1
ATATCCG	20	7.032662E-4	45.0	1
TACGATT	25	3.890287E-5	45.0	40
TAACACG	25	3.890287E-5	45.0	1
ACGGATA	35	1.2116288E-7	45.0	32
ACTACGT	35	1.2116288E-7	45.0	17