SRR2934979.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934979.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1255866
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	7416	0.5905088600216902	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	6479	0.5158989892233725	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	4792	0.3815693712545765	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	3124	0.24875265354743262	No Hit
ACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	2367	0.18847552207002977	No Hit
GCCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	1506	0.11991725231832058	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCC	1348	0.10733629224773981	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	1338	0.10654002895213342	No Hit
ACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	1323	0.10534563400872386	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGT	30	2.1656633E-6	45.000004	26
TCGTCAC	30	2.1656633E-6	45.000004	14
TATCGAT	30	2.1656633E-6	45.000004	18
CCGCATT	30	2.1656633E-6	45.000004	27
TACGTAG	30	2.1656633E-6	45.000004	10
GTGTTCG	35	1.2120472E-7	45.0	1
TTTAGCG	55	1.8189894E-12	45.0	1
ACTATCG	25	3.8910126E-5	45.0	33
TCGTTAG	20	7.033536E-4	45.0	1
TACCCGT	20	7.033536E-4	45.0	31
TCGCAAT	20	7.033536E-4	45.0	30
CGTATTA	25	3.8910126E-5	45.0	38
CGAGTAT	20	7.033536E-4	45.0	24
CCGATTA	20	7.033536E-4	45.0	10
GCGGTAT	20	7.033536E-4	45.0	14
ATTACGA	20	7.033536E-4	45.0	14
TAGCGAG	25	3.8910126E-5	45.0	1
GAATCGT	25	3.8910126E-5	45.0	43
ATTCGGT	20	7.033536E-4	45.0	29
CGTCTAC	35	1.2120472E-7	45.0	22