SRR2934978.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934978.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1429785
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	10227	0.7152823676286995	TruSeq Adapter, Index 23 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	9397	0.6572316816864073	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	6625	0.4633563787562466	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	4145	0.2899037267840969	TruSeq Adapter, Index 23 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	3217	0.2249988634654861	TruSeq Adapter, Index 22 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	2300	0.16086334658707427	No Hit
GCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	2191	0.15323982277055642	TruSeq Adapter, Index 23 (95% over 22bp)
AGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	1944	0.1359644981588141	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	1809	0.12652251912000756	No Hit
GGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	1716	0.12001804467105194	TruSeq Adapter, Index 23 (95% over 22bp)
GGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	1613	0.11281416436736992	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCC	1518	0.10616980874746902	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	1512	0.10575016523463318	No Hit
AGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	1434	0.10029479956776717	TruSeq Adapter, Index 23 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.033864E-4	45.000004	2
CGAGTTT	30	2.1658743E-6	45.000004	27
GTCGACG	20	7.033864E-4	45.000004	1
TACCACG	20	7.033864E-4	45.000004	25
GCGAAGT	30	2.1658743E-6	45.000004	29
CGGCACA	20	7.033864E-4	45.000004	24
ACTTCGC	20	7.033864E-4	45.000004	40
TCGATAT	20	7.033864E-4	45.000004	17
TAGCACG	30	2.1658743E-6	45.000004	1
AATGCGC	20	7.033864E-4	45.000004	38
CCCGTAA	20	7.033864E-4	45.000004	16
TGACCGA	40	6.8175723E-9	45.000004	25
GTATGCG	55	1.8189894E-12	45.000004	1
CTACGAT	20	7.033864E-4	45.000004	26
TCGTAGT	30	2.1658743E-6	45.000004	17
ACCACGT	20	7.033864E-4	45.000004	13
CCGACAA	20	7.033864E-4	45.000004	36
TTACGTA	20	7.033864E-4	45.000004	13
TTTGCGA	20	7.033864E-4	45.000004	1
CAATGCG	30	2.1658743E-6	45.000004	1