SRR2934973.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934973.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	667926
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	7064	1.0576021894641023	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	5684	0.8509924752143202	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	4709	0.7050182205813219	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2305	0.3450981096708318	No Hit
ACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1863	0.2789231142372059	No Hit
CGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	1190	0.17816344924437738	No Hit
ACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	1129	0.16903070100580006	No Hit
GCCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	1038	0.15540643724005354	No Hit
AAAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	1005	0.15046577016016746	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	983	0.14717199210691007	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	973	0.14567482026452033	No Hit
AGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	945	0.1414827391058291	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	936	0.14013528444767834	No Hit
GGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	789	0.11812685836454935	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	738	0.11049128196836176	No Hit
AGACATAGACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	668	0.10001107907163369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGA	25	3.8890437E-5	45.000004	16
CGGGTAC	35	1.2109012E-7	45.000004	6
TTAGGCC	25	3.8890437E-5	45.000004	25
AGGTACG	25	3.8890437E-5	45.000004	40
CTGTCGA	35	1.2109012E-7	45.000004	11
CCTTACG	25	3.8890437E-5	45.000004	45
CCCCTCG	25	3.8890437E-5	45.000004	30
ACTGCGG	70	0.0	45.000004	2
CTCGTCG	25	3.8890437E-5	45.000004	15
CTCCGTC	25	3.8890437E-5	45.000004	20
GACGTCG	25	3.8890437E-5	45.000004	19
GTAGGCC	35	1.2109012E-7	45.000004	23
TAACGCG	25	3.8890437E-5	45.000004	1
TCGATCA	25	3.8890437E-5	45.000004	17
TCGATAC	25	3.8890437E-5	45.000004	41
GACCCCG	25	3.8890437E-5	45.000004	2
ATACTAG	25	3.8890437E-5	45.000004	35
AATGCGA	70	0.0	45.000004	25
TCGTGCC	25	3.8890437E-5	45.000004	25
AGTGATT	25	3.8890437E-5	45.000004	18