SRR2934972.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934972.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1380022
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	9473	0.686438332142531	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	8913	0.6458592689102057	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	6059	0.43905097165117657	TruSeq Adapter, Index 14 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	3804	0.27564777952815245	TruSeq Adapter, Index 15 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	3076	0.22289499732612958	TruSeq Adapter, Index 14 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1934	0.14014269337735197	No Hit
CGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1681	0.12180965230989071	TruSeq Adapter, Index 14 (95% over 21bp)
AGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1676	0.12144733924531637	TruSeq Adapter, Index 14 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1541	0.11166488650180939	TruSeq Adapter, Index 14 (95% over 21bp)
GGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1515	0.10978085856602286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	75	0.0	45.0	25
ACTATCG	20	7.0337794E-4	45.0	28
ACGCATT	20	7.0337794E-4	45.0	22
CTATCGA	20	7.0337794E-4	45.0	29
ATATGCG	40	6.8175723E-9	45.0	1
TACGGAT	35	1.2121745E-7	45.0	30
ATGTCGC	20	7.0337794E-4	45.0	35
AGGTTAC	20	7.0337794E-4	45.0	15
CGTAGGA	20	7.0337794E-4	45.0	19
CACTACG	20	7.0337794E-4	45.0	13
ACGGATG	45	3.8562575E-10	45.0	12
CGAATGT	20	7.0337794E-4	45.0	12
TTACGTC	20	7.0337794E-4	45.0	43
TTACGAG	45	3.8562575E-10	45.0	1
TACTACG	20	7.0337794E-4	45.0	1
AATAGCG	35	1.2121745E-7	45.0	1
CGCGTAG	20	7.0337794E-4	45.0	13
TATCGGA	20	7.0337794E-4	45.0	28
TTCGACA	20	7.0337794E-4	45.0	44
ATTCTCG	40	6.8175723E-9	45.0	12