SRR2934969.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934969.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1720734
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63428	3.6861013962646174	No Hit
GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	2859	0.16615002667466325	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	2833	0.16463904357094122	TruSeq Adapter, Index 20 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT	1950	0.11332373277915123	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1751	0.10175890056220195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCAA	35	1.2123928E-7	45.000004	9
CTCCGTA	20	7.0342654E-4	45.0	30
ATTACGC	20	7.0342654E-4	45.0	35
CCGCTAA	20	7.0342654E-4	45.0	22
GTAATCG	20	7.0342654E-4	45.0	1
TGTAGCG	45	3.8562575E-10	45.0	1
CGTTTTT	49450	0.0	44.558647	1
TCGTAAG	65	0.0	41.538464	1
CGCGAAG	60	3.6379788E-12	41.249996	1
TGCGAAG	115	0.0	41.08696	1
GCGTTAG	110	0.0	40.909092	1
TAGCGAG	100	0.0	40.5	1
CCTCGTG	95	0.0	40.263157	15
CGACATA	45	1.9292202E-8	40.0	34
CACTCGA	40	3.459554E-7	39.375	44
TGTAACG	80	0.0	39.375	1
TAGTCCG	40	3.459554E-7	39.375	1
TCGCGCG	40	3.459554E-7	39.375	1
AGTCGTG	40	3.459554E-7	39.375	1
GTTGCCG	40	3.459554E-7	39.375	1